| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_635 |
|---|
| Symbol | hymB2 |
|---|
| ID | 8657568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | + |
|---|
| Start bp | 595555 |
|---|
| End bp | 597435 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | |
|---|
| Product | [Fe] hydrogenase, HymB subunit |
|---|
| Protein accession | YP_003330106 |
|---|
| Protein GI | 270308048 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGTAA TGAGTAATAC AGCGATTAAA AAGTTTAGCA GTGTAGCCGA ACTTGAGGCC
AAGCGGCAGG AAATTCTTAA AAGCAGGAAT TCTGGACAGA CGGTTATTGC TATTTGCTGC
GGTACCGGCT GCCAGGCCTA CGGGGCTAAA AAAGTTGCGG ACGCCTTTGA AGAAGAACTG
GCGAAAGCCG GTTTGGGAGA TAAAGTTGAG GTAAGGACTA CCGGCTGTCA TGGTTTTTGT
GAACGCGGCC CGCTGGTAGT TATCCGCCCC CAGAATATTT TCTACCAGCG TTTGAAAATT
TCGGATATAC CTGAAATCAT TGAAAAAACC ATAAAAAACA ACGAAGTAAT AGAACGTCTT
TTGTATGTTG ACCCCATGAC CAAAGACAAA AAGGTGCATG AACATGATGT GCCATTTTAT
AAAAAACAGA TGCGTCTGGT TTTTGGCAAC AACGGCAATA TAGACCCTAC CTCCATAGAA
GATTATCTGG CGGTAGGCGG CTATAAGTCT CTGGCCAAGG CTATATCTGG TCTCAAGCCA
GAAGAAATTG TAGACGAAAT TATAAAATCC GGTCTGCGCG GACGGGGCGG CGGCGGTTTC
CCTACCGGCT GGAAGTGGAA GTCCTGTCGG GACGCTCATG ATCCAGTAAA GTATGTAATC
TGTAATTGTG ACGAGGGTGA CCCGGGTGCA TTTATGGACC GCTCACTTAT GGAGGGTAAT
CCACATAGCG TTATAGAGGG CATGATTATC GGTGCGTATG CTATTGGCTC TCATGAAGCT
TATATTTATA TCCGTGATGA ATATCCTATG GCAGTCAGAC ATGCCCTTTT AGCTATAAAA
CAGGCTGAAG ATTATGGGTT ACTGGGTGGA AATATACTAG GCAGCGGCTT TAACCTGAAA
ATTCATATCA ACAGGGGCGG CGGTGCTTTT GTTTGCGGTG AGTCTACAGC TCTTATGGCT
TCTCTTGAGG GTAAGGTCGG CGAACCTCGT GCCAAATACG TCCATACCTC TGAAAAGGGT
CTGTATGACA AGCCTACTAC TCTGAATAAT GTGGAAACCT GGGCGAATAT ACCCCTGATT
ATGGAAAAAG GGGCAGATTG GTTCAATAAA ATAGGCACTG CGGGCAGCAA GGGCACCAAG
ATATTCTCAC TGGTGGGTAA GGTAAACAAC ACCGGCCTTA TTGAAGTTCC TATGGGTATT
ACCCTTCGGG AAATTGTATA TGATATAGGC GGCGGCATTC CCAAGGGTAA AAAATTTAAA
GCTATTCAGA CTGGGGGTCC TTCCGGCGGC TGTCTACCTG AAAGTATGCT GGATTTGCCG
GTAGATTTTG ATGAACTTAC CAAGGCTGGC TCTATGATGG GTTCGGGTGC CATGATTGTT
ATGGACGAAG ATAACTGCAT GGTGGAAATC GCCCGTTATT TCCTAAGTTT CCTTGAAGGT
GAATCCTGCG GCAAATGTGT ACCTTGCCGT GAGGGTGTAA AACGCATGCG CCAGATTTTG
GAAAAGATAA CAAAAGGTGA GGGCGAGGAG GGAGACATAG AGCTTCTGGA GCAGCTTTCG
CAAGCTATAC AGGACGCTTC TTTGTGCGCT CTGGGCGGCA GTGCTCCCAA TCCCGTCATG
TCTACCATAA AATACTTCCG TGAGGAATAT GAGGCTCATA TCCGGCAGAA AACCTGTCCG
GCTAAGGAAT GTAAAGCCCT TATTAACTAT AATATCATCG ATGCAAATTG TCCCGGCTGC
GGTTTGTGTT ATAAAGCCTG TCCGACAGGA GCTATTATTC CTCAGGGCAA AAAGATGCCG
GTTATACTTG ACCAGAGCAA ATGTACTAAA TGCGGTGCGT GTTTTGACGC TTGTAAGCTC
CACGCCGTAG AAATCAGATA A
|
|---|
| Protein sequence | MPVMSNTAIK KFSSVAELEA KRQEILKSRN SGQTVIAICC GTGCQAYGAK KVADAFEEEL
AKAGLGDKVE VRTTGCHGFC ERGPLVVIRP QNIFYQRLKI SDIPEIIEKT IKNNEVIERL
LYVDPMTKDK KVHEHDVPFY KKQMRLVFGN NGNIDPTSIE DYLAVGGYKS LAKAISGLKP
EEIVDEIIKS GLRGRGGGGF PTGWKWKSCR DAHDPVKYVI CNCDEGDPGA FMDRSLMEGN
PHSVIEGMII GAYAIGSHEA YIYIRDEYPM AVRHALLAIK QAEDYGLLGG NILGSGFNLK
IHINRGGGAF VCGESTALMA SLEGKVGEPR AKYVHTSEKG LYDKPTTLNN VETWANIPLI
MEKGADWFNK IGTAGSKGTK IFSLVGKVNN TGLIEVPMGI TLREIVYDIG GGIPKGKKFK
AIQTGGPSGG CLPESMLDLP VDFDELTKAG SMMGSGAMIV MDEDNCMVEI ARYFLSFLEG
ESCGKCVPCR EGVKRMRQIL EKITKGEGEE GDIELLEQLS QAIQDASLCA LGGSAPNPVM
STIKYFREEY EAHIRQKTCP AKECKALINY NIIDANCPGC GLCYKACPTG AIIPQGKKMP
VILDQSKCTK CGACFDACKL HAVEIR
|
|---|
| |