Gene DhcVS_624 details

Gene Information

• Locus tag: DhcVS_624
• Symbol: topA
• ID: 8657557
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. VS
• Kingdom: Bacteria
• Replicon accession: NC_013552
• Strand: -
• Start bp: 586713
• End bp: 588824
• Gene Length: 2112 bp
• Protein Length: 703 aa
• Translation table: 11
• GC content: 47%
• Product: topoisomerase IA
• Protein accession: YP_003330098
• Protein GI: 270308040

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGAAA AACTTGTTAT CGTTGAGTCA CCTGCCAAAG CCCGTACTAT CAGCAAAATG 
CTGGGCAAAG ACTTTAATAT TATGGCCACC ATGGGGCATA TACGGGATTT ACCCAAAAGC 
ACTCTGGGCG TAGATGTTGA AAACAGTTTT ACCCCCAAGT ATGTCTCCTT AAAAGCCAAG 
GCCAAGGTCA TAAAGGAACT CAAAGAGGCA GTTAAAAATT CCAAGGCAAT ATATCTGGCT 
ACCGACCCTG ACCGTGAAGG TGAGGCTATT GCCTGGCATA TATCCGAAGT TACAAAAGCA 
AATCTGGCTA AGCCCAAACG GGTGGTCTTT CACGAGATTA CCAAAGAAGC CATAGATAAA 
GCTTTTAAAA ACACCCGTGA GCTGGATATG GATTTGGTAA ATGCCCAGCA GGCCCGGCGG 
GTGCTTGACC GGCTGGTAGG TTACAAATTA AGCCCGCTGC TCTGGCGAAA GGTACAACGG 
GGACTTTCAG CCGGACGGGT GCAGTCTGTT TCCCTGAAAA TAATTGTTGA CCGCGAACGG 
GAAATAGAAA AATTCGTATC TGCCGAATAC TGGAATATAG AAGCTCTGCT GAATAAAAAG 
GTTAAATCAG CCGCTTTCAA AGCTTCTCTG GCAGGTTATG TAACCAAAGG CAAACTGGAG 
ATACATAACG AATCTGAAGC CGAACAAATT AAAAAAGAAC TGGAAGTAGC TGACTATCAG 
GTACTGAAGA TAAAAAAGAA ATCAAACCTC AGGCAGTCCC CCGCCCCCTT TATTACCAGC 
ACCCTTCAGC AGGAGGCTTG GCGAAAGCTC CATTTTTCAG CCAAACAAAC CATGGTGATA 
GCCCAGCAGC TGTATGAAGG CCTGAATATA GAGGGCGAAG GGGAAGTGGG TCTTATAACC 
TATATGCGTA CTGACTCTAC CAATGTAGCC CGTACCGCCG TAGCCGAAAC CCGTGATTAT 
ATAAGTGAAA AATACGGCCC GGCTTACCTG CCCAAACAGG CCAGAGTATT TTCAAGCAAG 
GTCAAGGGTG CACAGGAAGC CCATGAAGCT ATCCGCCCTA CCCGCATAAC CCGCACCCCT 
GACTTAATAA AAAAGAGTTT GTCTGCCGAA CAGTTCAAAC TTTACCAGCT TATCTGGCAG 
CGTATGATGG CCAGCCAGAT GAGCCCGGCC GCCTTTGATA ATACTACAAT AGATATAGAA 
GCCAAACATC AGCCCTCAAA AACCCGTTAT CTGCTTAGAA CCACCAGTTC GGTAAATACT 
TTCCCGGGTT TTACCATTGT ATATATAGAA GGAAAGGACG AAGATGAGGA AGCGGCGCAG 
TCCAGCCTGC CGTCCATGGA AGAAGGCGAA GAGCTGAAGC TGAAAAACCT GGAAGCCAGC 
CAGCATTTTA CCCAGCCTCC CCCCCGTTAT ACAGAGGCCA CCCTGATAAA AGCACTGGAG 
CAATACGGCA TAGGCCGCCC CAGTACCTAC GCCCCCACTA TTTCCACAAT ACAGGAACGG 
GAATACATTA CCAAGCTCAA AGGCAGCCTG AAACCCAGTG AACTGGGAAT GCTGGTAAAT 
GACCTGCTGG TAGAGTATTT CCCGGATATT ATCGGTATAG ATTTTACCGC CGCCATGGAA 
ACCGAACTGG ATAAAATAGC CACTGAAAAA CTGGATTGGG TGCCTATAAT CAGGCGGTTC 
TACGAACCGT TTATAAAAGA GATAGAAGCC GCCAGTGAAA AAATTGAAAA AATTAAACCG 
CCCGAAGAAG AGCTGGACGA GCTTTGTCCC GAATGCAATG CCAAGCTGGT AGTAAAACGG 
GGGCGTTTTG GTAAATTTAT TGCCTGCTCA CGTTATACCA AAGAAGAGGG CGGCTGCCGT 
TATACCCGCT CATACCAAAT AAAAACAGGT GCCAAATGCC CTGAGTGCAA TTCGGATATA 
GTTGAAAAAT ACAGCAAAAA GGGCAAGATA TTTTACGGCT GTGCCGGTTA CCCGAACTGC 
AAATTTGTAT CTTTCTACAA GCCGCTAAGC AAACCCTGCC CGGAATGCGG CGCCCTTATG 
ACCAAGAGCG GAAAGAACTG GGCCAAATGC ACCAAGTGCG GTAAACGCAA AAAACTTGAA 
GATGAAAGCT AA 

 

Protein sequence

MKEKLVIVES PAKARTISKM LGKDFNIMAT MGHIRDLPKS TLGVDVENSF TPKYVSLKAK 
AKVIKELKEA VKNSKAIYLA TDPDREGEAI AWHISEVTKA NLAKPKRVVF HEITKEAIDK 
AFKNTRELDM DLVNAQQARR VLDRLVGYKL SPLLWRKVQR GLSAGRVQSV SLKIIVDRER 
EIEKFVSAEY WNIEALLNKK VKSAAFKASL AGYVTKGKLE IHNESEAEQI KKELEVADYQ 
VLKIKKKSNL RQSPAPFITS TLQQEAWRKL HFSAKQTMVI AQQLYEGLNI EGEGEVGLIT 
YMRTDSTNVA RTAVAETRDY ISEKYGPAYL PKQARVFSSK VKGAQEAHEA IRPTRITRTP 
DLIKKSLSAE QFKLYQLIWQ RMMASQMSPA AFDNTTIDIE AKHQPSKTRY LLRTTSSVNT 
FPGFTIVYIE GKDEDEEAAQ SSLPSMEEGE ELKLKNLEAS QHFTQPPPRY TEATLIKALE 
QYGIGRPSTY APTISTIQER EYITKLKGSL KPSELGMLVN DLLVEYFPDI IGIDFTAAME 
TELDKIATEK LDWVPIIRRF YEPFIKEIEA ASEKIEKIKP PEEELDELCP ECNAKLVVKR 
GRFGKFIACS RYTKEEGGCR YTRSYQIKTG AKCPECNSDI VEKYSKKGKI FYGCAGYPNC 
KFVSFYKPLS KPCPECGALM TKSGKNWAKC TKCGKRKKLE DES