| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_570 |
|---|
| Symbol | ddlA |
|---|
| ID | 8657506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | + |
|---|
| Start bp | 538562 |
|---|
| End bp | 539578 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_003330047 |
|---|
| Protein GI | 270307989 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 60 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATAG GGCTGTCATA CGATCTTAAA CAGGCATTAA AACCGGTTGC CGGCGGCCCT
GATGATGCGT TGGAAGAATA TGACTCACCG GAAACGGTAG AGGCTATAAC AACCGCCTTG
AAGGCAGCGG GTCATACCGT TTATCGCTTG GGCGGGGGCA AAGAATTTTT ACGCAGGGTG
CAGGAACAGA AACTTGACCT TGTTTTCAAT ATTTCCGAAG GGTTGGGTAA CTACCGCAGC
CGCGAAGCCC AAATCCCCAG TATTTTAGAG ATGTTAGATA TACCTTACAC AGGTTCAGAT
CCGCAGACAC TTGCAATCTG TCTGGACAAA CCTCTCACCA AGAAACTGGT AGCCAGTGCA
GGTATAAAGA CTGCCAGATG GCAATTGGTA AACAACTGTG AAGAGCTTTC TGCTATAGAC
TGGTCGGGAT TTCCATTGCC GGCTTTTTTA AAGCCCGCCT GTGAGGGGTC AAGCAAGGGT
GTAAGGTTTG CTTCACGTGC CGAAAGTATT GACGAGATAA TGAGTATGGC TGCAGATCTG
CTGACTACCT ATGAGCAGCC TGTTTTAATA GAAGAATTTA TAAATGGTGA AGAGATTACA
GTAGGGGTTA TAGGCAACAC CTCCCCCGAG GTTTTGGGTA TAATGCGGGT TGTGCCTAAA
ACTAAGACTG ATTATTTTGT TTACTCTATA GAGGTTAAGC GCAACTGGCG GCAGATGGTG
GAATATGAAG TTCCGGCGGC TTTACCCGGG GAAACTCTGG CGCGGATTGA AAAAGCCACC
TTGGATGCGT ATAAAGTATT GGAATGTCGT GACCTGTGCC GTATGGATTT CAGAATAAGC
CCTGACGGCG TGCCGTATTT TCTGGAGGTA AACCCGTTGC CCGGTCTTAA CCCTGTCAGC
GGGGATTTGC CGATTATGGC ATCTAAACTG GGTATCAGCC ATGCAGAGTT GGTGTTAAAA
ATACTTAACA CGGCAATGGT TCGCCACAAT CTGTTAGCGG AGAACTGCCT GCTCTAA
|
|---|
| Protein sequence | MQIGLSYDLK QALKPVAGGP DDALEEYDSP ETVEAITTAL KAAGHTVYRL GGGKEFLRRV
QEQKLDLVFN ISEGLGNYRS REAQIPSILE MLDIPYTGSD PQTLAICLDK PLTKKLVASA
GIKTARWQLV NNCEELSAID WSGFPLPAFL KPACEGSSKG VRFASRAESI DEIMSMAADL
LTTYEQPVLI EEFINGEEIT VGVIGNTSPE VLGIMRVVPK TKTDYFVYSI EVKRNWRQMV
EYEVPAALPG ETLARIEKAT LDAYKVLECR DLCRMDFRIS PDGVPYFLEV NPLPGLNPVS
GDLPIMASKL GISHAELVLK ILNTAMVRHN LLAENCLL
|
|---|
| |