| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_544 |
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| Symbol | rpoC |
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| ID | 8657483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. VS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013552 |
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| Strand | + |
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| Start bp | 513206 |
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| End bp | 517093 |
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| Gene Length | 3888 bp |
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| Protein Length | 1295 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | |
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| Product | DNA-directed RNA polymerase beta subunit |
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| Protein accession | YP_003330024 |
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| Protein GI | 270307966 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGAAG TTAATGATTT TGATGCTATA CGGATTTCGC TGGCTTCCCC TGACCAGATA
CGAAGCTGGT CTTATGGTGA GGTTACCAAA CCTGAAACCA TAAACTATCG TACGTTAAAG
CCGGAGCGGG ACGGTCTTTT CTGTGAGCGC ATTTTTGGCC CTATTAAGGA CTTTGAGTGT
GCCTGCGGCA AATACAAACG TATCCGCTAC AAGGGCATTA TATGTGATAA GTGCGGAGTG
GAAATTGCCC GTGCCAAGGT ACGGCGTGAA CGGATGGGGC ATATTGAACT GGCCTGTCCG
GTAGGCCATA TCTGGTTCAC CCGCGGGATT CCCAGCCGCG TAGGCCTGCT GCTTAACCTT
TCTACCCGCA GCCTTGAAAG GATTATTTAT TATTCCCATT TCATTATCAC TGCGGTAAAT
GATGAAGCCC GTGAAAAGGC TATTAAAGAC CTTGAGGTTA TTTCATCCCA GCGGGTGGCT
GATAAGGGCA GCGAGGTAGA TACCAAGGTT GCCCAGATGG AAGCTGAAGA TGCCACTGTT
GAAGCTATTA ATCAGGTTCG CCGTGATTTT TCAGCTGAAC GTGAGCAAAT GGAAGAAGAT
ATCCAGCTGC TTATAGATCA GCTGAAAGAC CTGCAAATAG GTAATCTGCT GACCGAAAAC
CAGTATTACG AATTGAAACA GCGTTTCAGC AATGTTTTTG AAGCATCTAT GGGTGCTGAG
GCCTTGTTAA AACTGCTTTC TTACATTGAT ATGGACAAGG AACGGAGCAA ACTCATTCAA
GAAACCCGTT CCACCTCAGG CCAGCGCCGC AAAAAGGCCG GTAAACAGCT TCAGCTGGTA
GAGGCTTTCC GCCGTTCCAG CAACAAGCCT GAGTGGATGA TTATGACGGT TCTGCCGGTA
CTGCCGCCTG ACCTGCGTCC TATGGTTCAG CTTGATGGCG GCCGTTTTGC CACCAGTGAC
TTAAATGACC TTTACCGCAG GGTTATTAAC CGCAATAACC GTCTCCAGCA CTTGATGGAA
ATCGGGGCGC CGGAGATTAT TATCCGCAAC GAAAAGCGTA TGCTTCAGGA AGCGGTGGAT
TCACTGATTG ATAACGGGCG CCGCGGCAAG AGCGTGGCTG TAAATGGTGA CCACAAAGCC
AAGTCGCTTT CTGACTTGCT TCGCGGTAAA CAGGGACGCT TCCGCCAGAA TCTGCTGGGT
AAACGTGTTG ACTACTCAGG CCGTTCGGTT ATTGTGGTAG GCCCTTCACT CAAACTTTCA
CAGTGCGGTC TGCCCCGCCG TATGGCACTT GAGCTCTTTA AACCCTTTGT CATGCACCGT
TTGGTACGTG ACGGGTTAGC TCCTAATATC AAGAGTGCCC GCCGTTTGGT AGAGCGTGCC
CGCCCTGAGG TTTACGATAT TTTGGAAGAG GTGGTCAAAG AGAGGCCGGT TATGCTTAAT
CGTGCTCCTA CTCTGCATCG CCTTAGTATC CAGGCCTTTG AGCCGGTACT CATTGACGGC
AGTGCCCTCA GGCTTCACCC GTTGGTTTGT TCGGCATTTA ACGCTGACTT TGATGGTGAC
CAGATGGCTG TCCACGTGCC TCTTTCCAAG GCGGCCGTGA AAGAAGCCCG TGAAACCATG
CTGTCCATTC ATAATATGAT GCTTCCCTCC AGCGGTGAGC CGGTGGTCTC CCCCAGTCTT
GATATGGTCT TTGGTTGTTA TTACCTGACA ACCACCCGTC CGGGCGCAAA AGGTGAGGGT
AAAGTCTTCA GCGACTTTGA AGAAGCCAAA CATTATTACG AAATGGGTAT TATTGACCTC
CGTGCCATTA TCAAGGTACG TGACGGCAAA GGGAATATGC TGGAAACCAC TACCGGGCGG
ATTATATTCA ATGATGTCCT GCCCAAGGCT GTAGAGTTTC AGAATATGGA CATACCCAAA
TCCGCCATTA AAAAGATAAT CGGACGTTGT TACAAGATAC TTTCCAGCCA GGATATGGCT
ATCATGCTGG ACAAGATTAA ACAGCTTGGT TTCAAATACG CCACCAGCTC AGGCATTTCT
ATTGCCATGA GTGATATTTC AGTACCGCGT GAAAAAGCTA AACTGGTAGC CGCTGCTGAT
GAGCGGACTG CAATTTCCGA AGGGCAGTTT GCCCGCGGTC TTATCACCGA AGATGAACGC
TACAACAGCA TCATTGAAAC GTGGATGGAA ACGACTGACC GCATTACGGA CGCCATTCAG
GCTGGCTTTG ACAAACAGGG TTCTGTTTAC ATGATGGCTA ACTCTGGTGC TAAAGGTAAC
ATTTCCCAGA TACGCCAGAT GGCTGGTCTG CGCGGCCTTA TGACTAACCC TTCCGGCCGT
ATTATCGACT TCCCCATCAA GTCTTCCCTG CGTGAGGGTT TGACTGCCCT GGAGTACTTT
ATATCTACCC ATGGTGCCCG CAAAGGTCTG GCTGATACCG CTTTGCGTAC GTCCGGTTCA
GGTTATCTGA CTCGCCGTCT TATAGACGTA ACACAGGATG TTATCATTCT TCAGGAAGAC
TGCGGCACTT CAAATGGTAC CTGGATAGTA GAGCCCAAAG AAAAGGGTAT GCTGCCACCG
CTGGTTGACC GTGTACTTGG CCGCTGGGCT GCTCATAATG TGGTTCACCC CCAAACCGGC
GAAATTATTG TGGAAAACAA TGAAGAGATT GATGAAGCTA AAGCTAAGGC TATCGGCGAG
GCTGGTATTA CCGAGGTCTT TGTGCGTTCT CCTCTTACCT GCGAAGCTAC TCACGGCATG
TGCCGCCGCT GTTACGGGCG TGACCTTGGC CGTGTCCGTC TGGTAGACAT GAATACCGCC
GTAGGCATTA TTGCCGCCCA GAGTATCGGT GAACCCGGTA CCCAGCTGAC ACTCCGCACC
TTCCACACCG GCGGTGTGGT AGGCGTAGAT ATCACTACCG GTCTTCCCAG AGTTGAAGAA
CTCTTTGAAG CCCGCCCGCC CAAGGTTCAG TCTATAATAT CTGAGATAGA CGGTGCGGTA
GAAGTTATTG AAAATGAAAA TGGCCGCCAT ATCCGCATAG CCTCAGATGA GGTCTATCAG
GATGAATACG AATTACCTTC CGGCTGGAAG ACTCAGGTTC AAAGCGGTCA GTGGGTGGAT
TCCGGTATGG TACTGGCTTC GCCTGAAATG GAAGGCAAGT CCAAAGCTGT TGTTCAGAGC
GACCAGAATG TGGTTGCCAG AGTGGCCGGT GAAGTTTCAG TGGATGGCAA TCTGATTACC
ATCAAGTACA GCGAAAGTGA AGAACGCGAA TACGCTATAC CTGCCGCTAT GCAGATAAAG
GTTAAAACCG GGGATAGTGT CCGTGCCGGT CAGCAGCTGA CTGACGGCTC TATAAACCCG
CAGGATATTC TATCCATTTT GGGCAGGGAC GCTGTCCAGA AGTATCTGGT TGAAGAAGTT
CAGAAGGTTT ACTACTCTCA GGGTGTACAT ATCAATGATA AGCACATAGA GGTTATTGCC
CGCCAGATGC TTATCAAGGT ACGTATTGAT TCTTCCGGTG ATACAGACCT TGTTCCGGGT
GAACTGGTGG ACAAGTTCCG TTATGAGGAT ATCAATGCCA AGGTTTTGGC CGAAGGTGGC
GAACCTGCAA CTGCCCATAC CGTGCTTATG GGTATCACCC GTGCCTCACT CAGCACCGAA
AGCTGGCTAG CGGCGGCCTC CTTCCAGGAG ACCACCCGCG TCCTTACTGA TGCCGCCATT
TACGGCAAGG TGGACAAGCT GTCCGGCCTT AAGGAAAATG TTATCATAGG CAAGCTTATA
CCTGCCCAGT GTAAGTCCTG CAAGGAAGCT ACAGTTGAAA GAGCGGAACG TATTGCCGCT
GCAGCTTCTG CACCCGCTGT GAGCAGTCTG CCGGAAAATT GCCTTTAG
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| Protein sequence | MNEVNDFDAI RISLASPDQI RSWSYGEVTK PETINYRTLK PERDGLFCER IFGPIKDFEC
ACGKYKRIRY KGIICDKCGV EIARAKVRRE RMGHIELACP VGHIWFTRGI PSRVGLLLNL
STRSLERIIY YSHFIITAVN DEAREKAIKD LEVISSQRVA DKGSEVDTKV AQMEAEDATV
EAINQVRRDF SAEREQMEED IQLLIDQLKD LQIGNLLTEN QYYELKQRFS NVFEASMGAE
ALLKLLSYID MDKERSKLIQ ETRSTSGQRR KKAGKQLQLV EAFRRSSNKP EWMIMTVLPV
LPPDLRPMVQ LDGGRFATSD LNDLYRRVIN RNNRLQHLME IGAPEIIIRN EKRMLQEAVD
SLIDNGRRGK SVAVNGDHKA KSLSDLLRGK QGRFRQNLLG KRVDYSGRSV IVVGPSLKLS
QCGLPRRMAL ELFKPFVMHR LVRDGLAPNI KSARRLVERA RPEVYDILEE VVKERPVMLN
RAPTLHRLSI QAFEPVLIDG SALRLHPLVC SAFNADFDGD QMAVHVPLSK AAVKEARETM
LSIHNMMLPS SGEPVVSPSL DMVFGCYYLT TTRPGAKGEG KVFSDFEEAK HYYEMGIIDL
RAIIKVRDGK GNMLETTTGR IIFNDVLPKA VEFQNMDIPK SAIKKIIGRC YKILSSQDMA
IMLDKIKQLG FKYATSSGIS IAMSDISVPR EKAKLVAAAD ERTAISEGQF ARGLITEDER
YNSIIETWME TTDRITDAIQ AGFDKQGSVY MMANSGAKGN ISQIRQMAGL RGLMTNPSGR
IIDFPIKSSL REGLTALEYF ISTHGARKGL ADTALRTSGS GYLTRRLIDV TQDVIILQED
CGTSNGTWIV EPKEKGMLPP LVDRVLGRWA AHNVVHPQTG EIIVENNEEI DEAKAKAIGE
AGITEVFVRS PLTCEATHGM CRRCYGRDLG RVRLVDMNTA VGIIAAQSIG EPGTQLTLRT
FHTGGVVGVD ITTGLPRVEE LFEARPPKVQ SIISEIDGAV EVIENENGRH IRIASDEVYQ
DEYELPSGWK TQVQSGQWVD SGMVLASPEM EGKSKAVVQS DQNVVARVAG EVSVDGNLIT
IKYSESEERE YAIPAAMQIK VKTGDSVRAG QQLTDGSINP QDILSILGRD AVQKYLVEEV
QKVYYSQGVH INDKHIEVIA RQMLIKVRID SSGDTDLVPG ELVDKFRYED INAKVLAEGG
EPATAHTVLM GITRASLSTE SWLAAASFQE TTRVLTDAAI YGKVDKLSGL KENVIIGKLI
PAQCKSCKEA TVERAERIAA AASAPAVSSL PENCL
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