| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_543 |
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| Symbol | rpoB |
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| ID | 8657482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. VS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013552 |
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| Strand | + |
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| Start bp | 509401 |
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| End bp | 513219 |
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| Gene Length | 3819 bp |
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| Protein Length | 1272 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | |
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| Product | DNA-directed RNA polymerase beta subunit |
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| Protein accession | YP_003330023 |
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| Protein GI | 270307965 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.195704 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTATCTA TGTTACCTAA GGCCGACGCC GCCACTGGTG TAATCCGCAA ATCTTATGCC
CAATTACCCG AGGTTGTCAA TGTACCTAAC CTGATAGAGA TGCAGCTGCA GTCTTTTGTC
TGGTTTCAGG AGGAGGGTCT CCGTGAACTG ATTGAGGAGA TTTCTCCAAT CAAAGACTTT
GTGGGAAACA GGCTGGAACT GGAATTCATC GGCTATGAAT TCAGAGAGCC CCGTTTATCC
GAGTACGAAT GTACCCAGCG TGACCAGACC TACTCTGTGC CCCTATATGT AAAAGCCAGG
CTGATAGTAA AAACTACCGG TGAAATCAAA GAACCCTTTG ATTTGTTCTT CGGGGATATC
CCACTTATGA CCGCTTTGGG TACATTTATT ACCAGCGGTA CGGAGCGGGT AGTTGTCAGT
CAGCTATTGC GTTCACCGGG TGTTTACTTT ACCATTTCAG ATGACCCGGC AACCGGCCGC
CCTCTCTGCC ACACTAACCT TATTCCCAGC AGGGGTGCAT GGCTGGAGTT TGAAACCTCC
AACCGTGATG TTATTTCAGT AAAGATTGAC GGCCGCCGCA AGATTCCCGT CAGTACCCTT
CTGAGGGCCA TAGGTTATTC TGACGATTTG GATATTTTAA ACCTGTTTGA GGTTATTGAT
AATGACCCCG AACGCCATTA TATCCAGTCC AGCATTGACC GTGATCCGCT TATAAAGGAT
GAAATAAGTG CCCTTATTGA TATTTACAAC CGTTTGCGCC CCGGTGATCC GCCCAATGCG
GACAACGCCC GCAAACTTAT TAACGAAATG TTCTTTGACC CCCAGCACTA TGACCTGGGC
AAGGTAGGCC GTTATAAGGT TAACCGCCGT CTGGAATTGC CGGCCCGTGA GGTTGGTGAA
AACCGTGCCC TTACCCGTGA GGACATAGTA GCCATTATCC AGCGGATTAT CATGGTCAAT
AACGGACAGG ATACTCCGGA TGATATCGAC CATTTGGGCA ACCGCAGAAT CCGCACTGTG
GGTGAACTTG TTCAGAACCA GTTCCGCATA GGTCTGGTAC GTTTGGAGAG AGTTGCCCGT
GAGAGAATGA GCATTGTCAA TCTGGAAATG GTTACTCCCA GTGCCTTGGT TAATATCCGC
CCGGTGGTTT CAGCTGTTAA AGAGTTTTTT GGTGGTTCAC AGCTTTCCCA GTTTATGGAC
CAGACCAATC CTCTGGCTGA AATAACCAAC AAACGCCGTC TGTCCGCCAT GGGTCCCGGC
GGTCTTTCCC GCGAAAGAGC CGGCTTTGAC GTTCGTGACG TTCATTACTC TCATTACGGG
CGTATCTGCC CCATTGAGAC GCCTGAAGGC CCGAATATTG GTCTTATCGG TTCTCTGGCT
ACTTATAGCC GGATTAACCG CTACGGCTTT GTGGAAACTC CTTACCGCAA GGTTTATTCC
AAACTGAAAA ATAGTGATAA AAAACTGGTT GGTCTTAAAC TGAAGACCGA AGTCAGTGAA
AAAGGCAAGG TTCTTGCGGC TGCCGGTACT ATCATTACCG AAGACAGCTT TAAGCTCATT
TCAAAGCTGC CTGAGTGTGA TATTCAGGTT ATGCCGTTTG TATCTGCCGA AGTCAAATAT
ATGCCTGCAG ACGAAGAAGA CCGCTATATT ATCGCCCAGG CTAATACCCG TTTGGACGAT
AAAGGTTATT TCCTTGATGA AAGGATTGAA GCCCGTCTGG CTGAACGCTA TGTAATAGAG
CCCCCCGAAA AGATTGATTA CATGGATGTT TCACCCAAAC AGATTTTCAG CGTAGCGGCT
TCGCTTATTC CGTTCCTTGA GCATGACGAT GCCAACCGCG CCCTTATGGG TGCCAACATG
CAACGCCAGG CTGTTCCTCT GCTTCGGGCA GAAGCCCCCA TGGTAGCAAC CGGTATGGAA
CGCGAAGCAG CCAGATACTC CGGTCAGGTT ATTTTTGCTA AGCGCGCCGG TGTAGCTACT
TCGGTTACCA GCGAGAAAAT AATAATCCGC ACCGCTAACG GCGGACATGA TGAATATCTG
CTCAAGAAAT TTGTCCGCAC CAATCAGGGT ACATGTATAA ATCAGCATGC CGTTATAAAT
AAAGGACAGA AGATAGAGGT CGGGCAGGTA TTGGCTGACA GCTCTGCTAC CGAAAACGGC
GAACTGGCTC TGGGTCAAAA CTGTGTTGTG GCCTTTATGA GCTGGCAGGG TTTTAACTAT
GAAGATGCTA TTATCCTCAG CGAACGTCTG GTAAGGGAAG ACGCCTTTAC CTCTATTCAT
ATTACCAAGC ATGAGCTTGA GGCCAGAGAT ACCAAACTGG GTGTTGAAGA AATCACCCGT
GATATTCCCA ACGTAGGTGA AGAAAGCCTG CGCGAACTGG ATGAAGACGG TATTATCCGC
ATAGGGGCTG AAGTCGGTCC TGACGATATT CTGGTGGGTA AAATTACCCC CAAGGGTGAA
ACCGAACTTT CAGCAGAAGA AAAACTCCTT CGGGCCATTT TCGGCGAGAA AGCCCGCGAA
GTTAAGGACA CTTCACTCCG TATGCCTCAT GGTGAATGGG GTAAGGTTAT AAATGTAAGG
GTCTTCTCCC GTGACAGCGG TGATGACCTG CCTGCCAGAG TGAACAAATG GGTGCAGGTT
TGGGTTGCCC AGAAACGCAA GGTTTCAGTG GGTGACAAAC TGGCTGGCCG CCATGGCAAC
AAGGGTGTTA TCTCTATAAT TGCCCCGGTA GAGGATATGC CTTATCTGCC TGATGGCACC
CCGGTAGATG TGGTTTTGAA TCCCATCGGC GTACCTTCAC GCATGAATCT GGGACAGATT
CTGGAAACTC ATCTGGGTTG GGCAGGACAT CTGCTGGGCT TCAGAGTGGC TACTCCCGTA
TTTGACGGGG CGGATGATAC CGCTATTGAA GACGCTTTAG CCCGCTCCTG GCTTTCAACC
AAGGCTGGTG CAATAGACAT GAGCCCTGAA AACAAACGCC CCAGCGCAGA TAATGCCAAG
GCTATAGAAT GGATAAAACA GCAGGGCTTT GACGGCAAGA AGATATTTGA TGAAAAACAC
CCTGGTCTGG CCAAGGAGGT CAGCCTTAAG CTTTGGCTTA AGGATATGGG GGTAGATGCT
TCTGCTTTAA GCGGGGCTGA ACTGGAAAAG AGAGCTTACG AAGTAAGCAG CCAAAACCGC
CTGCCTTCGC CTATTGTGGG TAAATCAGTG CTGCGTGACG GCCGTACCGG CGAAACATTC
GACCAGCCGG TAACCGTAGG CAATATGTAT ATTTTGAAAC TTATCCATCT GGTGGAGGAT
AAAGTCCACG CCCGTGCAAC CGGTCCGTAT TCACTTATCA GCCAGCAGCC TCTTGGCGGT
AAAGCCCAGT TCGGCGGCCA GCGCTTTGGT GAAATGGAAG TTTGGGCCAT GTACGCGTAT
GGTACAGCTC ATAACCTTCA GGAGATGCTG ACTATCAAGT CAGACGATAT TGCCGGGCGA
GCCAAGGCTT ATGAATCTAT TGTAAAGGGG GAGGATGTAC TCCAGCCCGG TGTACCCGAA
TCCTTCAAGG TGCTTGTAAA GGAACTGCAG AGTCTGGGTT TGGCAGTTGA AGTGATAAAT
GAAGAAGTTA AAATTGCTCC GTCCGAGAAA GTAGCCTCTC TGAATGAAGG AAGCCCGCCG
GGGAGTGATG ATATTTCTGC TGAAATACTT CCTGAAACCC TGTATGCAGG CACAGAGGAT
ATTGAAGACT CCATGATGTC GGTAATTGAT GCTGACGATC AAGATTTGGC AATGTCATCA
AATGATGAAG AGGTATCCGA AAACGATGAA CGAAGTTAA
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| Protein sequence | MVSMLPKADA ATGVIRKSYA QLPEVVNVPN LIEMQLQSFV WFQEEGLREL IEEISPIKDF
VGNRLELEFI GYEFREPRLS EYECTQRDQT YSVPLYVKAR LIVKTTGEIK EPFDLFFGDI
PLMTALGTFI TSGTERVVVS QLLRSPGVYF TISDDPATGR PLCHTNLIPS RGAWLEFETS
NRDVISVKID GRRKIPVSTL LRAIGYSDDL DILNLFEVID NDPERHYIQS SIDRDPLIKD
EISALIDIYN RLRPGDPPNA DNARKLINEM FFDPQHYDLG KVGRYKVNRR LELPAREVGE
NRALTREDIV AIIQRIIMVN NGQDTPDDID HLGNRRIRTV GELVQNQFRI GLVRLERVAR
ERMSIVNLEM VTPSALVNIR PVVSAVKEFF GGSQLSQFMD QTNPLAEITN KRRLSAMGPG
GLSRERAGFD VRDVHYSHYG RICPIETPEG PNIGLIGSLA TYSRINRYGF VETPYRKVYS
KLKNSDKKLV GLKLKTEVSE KGKVLAAAGT IITEDSFKLI SKLPECDIQV MPFVSAEVKY
MPADEEDRYI IAQANTRLDD KGYFLDERIE ARLAERYVIE PPEKIDYMDV SPKQIFSVAA
SLIPFLEHDD ANRALMGANM QRQAVPLLRA EAPMVATGME REAARYSGQV IFAKRAGVAT
SVTSEKIIIR TANGGHDEYL LKKFVRTNQG TCINQHAVIN KGQKIEVGQV LADSSATENG
ELALGQNCVV AFMSWQGFNY EDAIILSERL VREDAFTSIH ITKHELEARD TKLGVEEITR
DIPNVGEESL RELDEDGIIR IGAEVGPDDI LVGKITPKGE TELSAEEKLL RAIFGEKARE
VKDTSLRMPH GEWGKVINVR VFSRDSGDDL PARVNKWVQV WVAQKRKVSV GDKLAGRHGN
KGVISIIAPV EDMPYLPDGT PVDVVLNPIG VPSRMNLGQI LETHLGWAGH LLGFRVATPV
FDGADDTAIE DALARSWLST KAGAIDMSPE NKRPSADNAK AIEWIKQQGF DGKKIFDEKH
PGLAKEVSLK LWLKDMGVDA SALSGAELEK RAYEVSSQNR LPSPIVGKSV LRDGRTGETF
DQPVTVGNMY ILKLIHLVED KVHARATGPY SLISQQPLGG KAQFGGQRFG EMEVWAMYAY
GTAHNLQEML TIKSDDIAGR AKAYESIVKG EDVLQPGVPE SFKVLVKELQ SLGLAVEVIN
EEVKIAPSEK VASLNEGSPP GSDDISAEIL PETLYAGTED IEDSMMSVID ADDQDLAMSS
NDEEVSENDE RS
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