| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_241 |
|---|
| Symbol | |
|---|
| ID | 8657185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | + |
|---|
| Start bp | 228255 |
|---|
| End bp | 229763 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | LtrC-like protein |
|---|
| Protein accession | YP_003329731 |
|---|
| Protein GI | 270307673 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCAG GACAGGCGAC AGTAACGATT GGTAACAGGC AATGGTCGAC TGACCTGGCC
ACGGCGCCCT GGGAACTGAC GCAGGGACTA GGTGGGATTC AGGAGATACC GCCTGATACC
GGCATGCTCT TTGACCTGGG CTTCGAGCAG ACTATAACCG TGACCACCGA GCCAATGCTC
TTTCCTCTCG ATATCACCTT TCTTTCGGAG GACCTGGTAG TAACCGAGAT ATATCACAAT
GTCCAACCGG GGCATCTGGT AACCTCGATG TCGGCAGCAC GCTACTTTCT TGAAGTTAAT
GCCGGCGAAC TCGATGGCCT TGTTAGCGGC AGCCAGGCCT TATTTCAGCT AATAGCCTCT
GAAAGCCCCG TAGAAGCCCC CGATTGGGTC ACGCCGATGA TTTCCTTCCT GGGCTTCACT
TTAATGGGCT TTTTCCTGGT AGGAATTGTC AGGGACTTCA CCGGTTCGAT GTTCGTTGAA
CCTGAGAGGA AATATCTCCT ATCCGAGACG AAAAAGGGCA AGTGTTCTTT TTGCCAGGGT
TCACAGGAAC AGTGCGAGGT CTGCGAAAAG GTCTCACCGC GGGACTACAA CCTGCTCAGC
TGGGTTGGTG CGCCGGTACC TGATTACAGC TTTGCTGTCG AGTCCGAAAC CAAGGAACGC
AAGATTGACG AAGTCCTGAA AAAACTCAAG GAAGGCGTTG ATGGTATCCA GCAAAGCGAC
AAGTTCCGCG AGTTTCTGCT CACCATGTCC AAGTTCCATA ACTACAGCAT CGGCAATCTG
ATACTCATCA TGCTGCAAAA GCCAGATGCT ACCCACGTCG CCGGCTACAG CACCTGGAAA
GACTTGTACC GCTGGGTCAA GAAGGGTGAG AAGGGAATCG CCATCCTGGC ACCCTGCATG
CCGCCGAAGC AAAAGAAGCT TGAATCGCCG GCGGATGCTG AAGTGGAGGG TGAAGAGGGA
AAACCTGATG AAGAGACTGA AATCCGCCCG GTCTTTTTCA AGGTTGTTCA CGTTTTTGAT
GTCAGCCAGA CAGAAGGCAA ACCGCTTCCC GAGTTTGAAG TGCCGTCTCT TACCGGCGAA
GCCAATGAAG AGCTGTTCAG CCAGGTGAAG AGACTGGTTG AGGCGCAGGG AGTCGAGGTG
AGCTTCATAT CGCGGCTTGA CCAGGACCCA GATATCAAGG GGTTCTATTC TGGAAAACTC
ATCTGGGTCA GACCTGAAGA ATCCCGAGCC CAGCAACTGA AGACGCTGCT TCACGAGGTA
GCCCACTATT ACTCTGAAGG AGTTTTTCGC ATACCAAGAG CCGATGCCGA GACTATTGCT
GAAAGCGTGG CTTTCACAAT CGGCGCCCAC TTCGGCTTCG ATACCGGGAC TCGCTCATTC
CCCTATGTTG CTTTATGGGC GAAGGATAAG AAGACCCTGG AAGCAAATCT GGCTGCTATA
AGGAAGGTGT CCGGGAAAAT CATTGATGGA CTAGAGCAGA GTGCTGTCAA GATGGCTGGG
GTAGTCTAG
|
|---|
| Protein sequence | MMAGQATVTI GNRQWSTDLA TAPWELTQGL GGIQEIPPDT GMLFDLGFEQ TITVTTEPML
FPLDITFLSE DLVVTEIYHN VQPGHLVTSM SAARYFLEVN AGELDGLVSG SQALFQLIAS
ESPVEAPDWV TPMISFLGFT LMGFFLVGIV RDFTGSMFVE PERKYLLSET KKGKCSFCQG
SQEQCEVCEK VSPRDYNLLS WVGAPVPDYS FAVESETKER KIDEVLKKLK EGVDGIQQSD
KFREFLLTMS KFHNYSIGNL ILIMLQKPDA THVAGYSTWK DLYRWVKKGE KGIAILAPCM
PPKQKKLESP ADAEVEGEEG KPDEETEIRP VFFKVVHVFD VSQTEGKPLP EFEVPSLTGE
ANEELFSQVK RLVEAQGVEV SFISRLDQDP DIKGFYSGKL IWVRPEESRA QQLKTLLHEV
AHYYSEGVFR IPRADAETIA ESVAFTIGAH FGFDTGTRSF PYVALWAKDK KTLEANLAAI
RKVSGKIIDG LEQSAVKMAG VV
|
|---|
| |