| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1509 |
|---|
| Symbol | |
|---|
| ID | 8658434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 1397932 |
|---|
| End bp | 1399635 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_003330933 |
|---|
| Protein GI | 270308875 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGAAT TAGGCTCCAG CTTCGGGTTG GACTTAATTA TTGTGCTTAT AGCGGCCGTT
CTGGCCGGTT TACTGGCACG CCGCTTCAAA CTGCCGCTTC TTCTGGGTTA TCTGGGGGCT
GGTATAGCCA TAGGCCCAAA CGGTTTCGGT TTGGTGCAGT CTCCGGGCGT TATTGAATCC
ATGGCTACAG TCGGCGTTAT TCTGCTCCTT TTTACCCTTG GTCTTGATTT TTCGCTGGAT
GAGCTGAAGA GGGTGGGAAA AGTGGCGGTG CTGGGCGGTC TTATCCAGAT AATTGTTACC
GCCGGGTTTG GGTTTTTGCT GGGCAGAGGC CTTGGCTGGG ATATAAATGC CTCTATCTTC
TTCGGGTTTA TGGTCTCGCT TTCCTCTACC CTTATAGTTC TTAAAATACT TATGGACAGA
GGTGAGGCGG AAGCCCCTCA CGGGCGGGTG ATGCTGGGCA TCCTGCTAGT GCAGGATATT
TGCCTTATTC CCCTGATGAT TATTTTACCG GCTTTGGGGA GTGAAGGCGG GGACATCGGC
CTGACCATAG GTGTTGCCTT TGCCAAAGCG GCGGCCTTTA TTCTGGTTAT GTTTGCTTTG
GGGTTTTGGG TTTTCCCCCG TCTGCTGGGG AGAGTGGCTT CCCATTCGCA CGAGCTTTTT
CTGCTGTCTG TTATCACCCT GTCTCTGGGG GCGGCCATGG GGGCAACTGC GCTGGGTCTT
TCACCGGCAG TAGGTGCATT TATAGCAGGG CTTCTTATTG GGCAGTCTAT GTATGCCAAG
CAGGCACTGG CAGATATAAT CCCCCTTAGG GATATTTTCG GGGCTTTGTT CTTTGTTTCT
CTGGGTATGC TGGCAAACCT TAATTTTGCA GTGGAGAATA TGGGCTTGGT TCTGCTGGTA
GTTGTCTTCC TGCTGGTCAT CAAGAGTCTG GTGGCCGGGG TAGTGCCATG GCTGTTCGGC
TATACTTTCC AGACCTCATT TACTACCGGT ATCGGTCTGA TGCAGATAGG TGAATTCAGC
TTTGTACTGG CCGGGGTGGG TCTGGCATCA TCAGTTATTT CTGACAGTAT TTATGCCATT
ACCATCAGCA GTGCCGTTAT TACCATGATA ATCACCCCTT TTGCCTTAAG TTTCAGCGGT
GCGGCTTACA GAAAGGTCAG CCAGTGGCCG CTGGCAAGCA AACTGGTCAG CCTGCGTACC
TCCGGGCAGG CGGAGTTTAT GGATTTAGAC ATTTCCAACC ATGCGGTTAT CTGTTCGCAG
GGGGGTGTTG CCAAGACTCT GACCCGGGTG ATGAACCGCC GCAATTTCCC CTTTCTGGTT
ATAGATTTAG ACCCCCAAAC CATTGCCGAA CTTCGCCGCC AGAAAGCACC TGCCATATAC
GGAGATGCCG CCAATCCCGA AATACTCAGG TTTGCCCGTT TGGAGAAAGC CCGTCTGCTC
ATCTGTGCTA TGCCTGGTTT TGCGGATACC GAACAGGTGG TTAAAAATGC CCGCAAGATA
AATGCGCGGC TGGATATAGT AGCCAGGGTG ACCAGTGACA CTCAGGCTGC AAAACTCAAA
CAAATGGGTG TCAGCGAGGT AGTCCAGCCT GAGTTTGAGG TAGGTTTGGA ACTTTCACGC
CATGCCATGC ACCGCTTCGG TATGACTACC ATTGAAATCC AGTACATTTT AAACAGCCTG
CGGAATATGG GTAAAAATGA GTAG
|
|---|
| Protein sequence | MEELGSSFGL DLIIVLIAAV LAGLLARRFK LPLLLGYLGA GIAIGPNGFG LVQSPGVIES
MATVGVILLL FTLGLDFSLD ELKRVGKVAV LGGLIQIIVT AGFGFLLGRG LGWDINASIF
FGFMVSLSST LIVLKILMDR GEAEAPHGRV MLGILLVQDI CLIPLMIILP ALGSEGGDIG
LTIGVAFAKA AAFILVMFAL GFWVFPRLLG RVASHSHELF LLSVITLSLG AAMGATALGL
SPAVGAFIAG LLIGQSMYAK QALADIIPLR DIFGALFFVS LGMLANLNFA VENMGLVLLV
VVFLLVIKSL VAGVVPWLFG YTFQTSFTTG IGLMQIGEFS FVLAGVGLAS SVISDSIYAI
TISSAVITMI ITPFALSFSG AAYRKVSQWP LASKLVSLRT SGQAEFMDLD ISNHAVICSQ
GGVAKTLTRV MNRRNFPFLV IDLDPQTIAE LRRQKAPAIY GDAANPEILR FARLEKARLL
ICAMPGFADT EQVVKNARKI NARLDIVARV TSDTQAAKLK QMGVSEVVQP EFEVGLELSR
HAMHRFGMTT IEIQYILNSL RNMGKNE
|
|---|
| |