Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DhcVS_1440 |
Symbol | gatB |
ID | 8658365 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. VS |
Kingdom | Bacteria |
Replicon accession | NC_013552 |
Strand | - |
Start bp | 1341891 |
End bp | 1343381 |
Gene Length | 1491 bp |
Protein Length | 496 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | |
Product | glutamyl-tRNA(Gln) amidotransferase, B subunit |
Protein accession | YP_003330867 |
Protein GI | 270308809 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000724342 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGTAACTA CAATGACTCA ATATGAAACA GTAATCGGGC TGGAAGTACA TGTTCAGCTG AATACCAAAA GCAAAATGTT TTGCCGCTGC AGTACAGACT ATACCAGTGC CGAACCCAAT ACCCATGTCT GCCCGGTATG TCTGGGTATG CCGGGGGTAC TGCCCACTAT AAATAAACAG GCGGTGGAAT ACACCATTAT GTCCGGCTTG GCTTTAGGCT GTGATATAGC TTCCTTTACC AAGTTTGACC GTAAAAATTA CAACTATCCT GACCTTATGA AAGGTTACCA GATTTCCCAG TATGACCAGC CGCTTTGCGG CAAGGGATTT ATGGATATAA ATATAGACGG GGCTATCCGC CGCATTGGCA TAACCCGCAT TCACCTTGAA GAAGACGTAG CCAAACTGCA CCATGAGAGT GATATTAACG GCCAGCCTTA CAGCCTTTTA GATATAAACC GCTCCAGCAT ACCTTTGATG GAGATAGTCA GTGAGCCGGA TATGCGCACC CCGGAAGAAG CCCGCCAGTA CCTTATGAAA CTGCGGACTA TAATGCGCTA TCTGGGTGTT TCCACTGCCA ATATGGAAGA TGGCAGTTTC CGCTGTGATG CCAATATTTC CATACGGCCT GAAGGCTCAG ATGCTCTGGG CGCTAAAGTG GAAGTAAAAA ATATGAACAG CTTCAAGGCG GTTTTTTCCG CCTTGGAATA CGAAGAAATC CGCCAGCGGA AAATGGCAGA TGAAGGCAAA AAGATAAGCC AGGAGACCCG CGGCTGGCAG GACGACAAAT GTCAGACTGT CTCCCAGCGT TCCAAGGAAT TTGCCCATGA CTATCGCTAT TTCCCCGAAC CGGATTTGCC CCCCCTGCAT ATCAGCTGTG ACTGGATAGA AGCCATCAGG GCTAAGCTGC CCGAACTGCC CGAAGTCCGC AAAGAAAGGT TTATTCAGGG ATACTGGCTG TCCGAATATG ATGCTTCGCT GCTGACTGCC AGCCGTGAAC TGGCAGACTA TTTTGAAGCG GTTCTGTCCG AAGCTGATTT CCAGAATATC CCCCAGGACA AGGGCGTAAA GGAAGTGGCT AACTGGGTGG TTGGGCCGGT AAGCTCCATA ATGAATACTG CCGGGGCGGA TATAAACGCT TTTGCCCTCA AGGTCAGCCC GGCCAGTCTG TGCCATCTTT TGGTGCTGGT TTCAGCCGGC AAAGTAAATG CCGCTACAGC CAAAGCTGTG CTTGAGGATA TGTATAGTAC CGGGCAGAAT GCCGAGACTA TTATTGAAAA GAAGGGTCTC AGCCAGATTT CCGACAGTTC CGAGCTGGTA GCCATTGCTA AAAAGGTGCT GGCGGATAAC CCCAAGGCGG TTGCCGAATA TAACGAAGGC AAGACCCAGG TTATCGGCTT TTTAGTAGGC CAAATGATGA AACAAAGCAA GGGCAGAGCC AACCCTAACA TAGCCATGGA GTTGCTTAAG AAAGCTCTGG AGGAAGGATA A
|
Protein sequence | MVTTMTQYET VIGLEVHVQL NTKSKMFCRC STDYTSAEPN THVCPVCLGM PGVLPTINKQ AVEYTIMSGL ALGCDIASFT KFDRKNYNYP DLMKGYQISQ YDQPLCGKGF MDINIDGAIR RIGITRIHLE EDVAKLHHES DINGQPYSLL DINRSSIPLM EIVSEPDMRT PEEARQYLMK LRTIMRYLGV STANMEDGSF RCDANISIRP EGSDALGAKV EVKNMNSFKA VFSALEYEEI RQRKMADEGK KISQETRGWQ DDKCQTVSQR SKEFAHDYRY FPEPDLPPLH ISCDWIEAIR AKLPELPEVR KERFIQGYWL SEYDASLLTA SRELADYFEA VLSEADFQNI PQDKGVKEVA NWVVGPVSSI MNTAGADINA FALKVSPASL CHLLVLVSAG KVNAATAKAV LEDMYSTGQN AETIIEKKGL SQISDSSELV AIAKKVLADN PKAVAEYNEG KTQVIGFLVG QMMKQSKGRA NPNIAMELLK KALEEG
|
| |