| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1349 |
|---|
| Symbol | rdhA |
|---|
| ID | 8658274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 1248692 |
|---|
| End bp | 1250077 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | |
|---|
| Product | reductive dehalogenase |
|---|
| Protein accession | YP_003330776 |
|---|
| Protein GI | 270308718 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAAT TAAATACAAA ATTATCTCGC AGAAAATTTA TGAAAGGTTT GGGAGTGTCA
TCAGCTATTG CAGCGGGTGC GGTTTTAACA TCTGCTACAA CTGTCGCGGC TGCTGAAGGA
GGAATTGATC CTGGGGAGAA ATTAGGTGCC CATGATGCAT ATGATGGAAG TTCTATAAAA
AGAGTCTTAC CAGCGAATTT CTATAAGGAA ATCGAGACCC GGTCTGGTTA TATTGGGACA
ACTAAAATAG TTGATCCGGG TAATCGGTTT GATGCAAGGC AACATGGTTT TGCTCAAATA
TCTGCATGTA TAGGCTCTGG TGATTTCTCT GTGGAAAAAA GCTCATGGGG GCCGGTACTC
CAAAAGGCTT TTGCGGCAAA GAAACAATTT CAATCTGAAA TTTCTGCAGA ATTGAAAGAG
GATTATGTAT GGAGCGGGGC TCTTACAAAC TCTATGGATG CTATGCACTA TACTCTCCGA
TCGGGGAATT TTGATTCTAT ACCGATAAGT GGTAATAAAT TAACTTTATC ACCTGAAGAA
GCAACCGCTA AAATAAAGAA ACTTGCTTAC TGGATTGGTT TGGAGCGGGT GGGTATATGT
GAAATAACTG AAGACTTGAA ACCTTACTTT TATTCAAAAC GAACGACTGG TTTAAAAACA
GTTGGTGTTC CTGCGGGTTT TAAAGTCGAT GGTATTGATG TCCCTTGGCC TTTTCCCTAT
AAATATTGCA TTTGTATGGC AGATGCTTGT GATTATAATG CAGGAAGAGG TTTGCGTGGC
CCGCTTGTTG AAGCGACTGG TAAAACTTCT TGTATGGTCT CTGATTTCCC TGCATATCAA
ATGGAGACTA TAATCAGGAG TTTAGGTTAT GACGCAAAAG CCAACGCAAT TTGTGATACG
GCTACCATGT CAGAACCGCT CGCAGTACAG GCTGGTTTGG GTGAACTGGG AAGATCTGGA
TTAGTGATTT CGCCTTGGGG CGGTAATTTT AGATTGACGG AATGTTTTAC AAATTTGCCG
TTGATTCCTG ACAAACCCAT CGATTTTGGG CTGCAAGAAT TTTGCAAAGT ATGTAAGAAA
TGTGCGGTCA ATTGCCCTGC TTCGGCTATT TCAATAGATG ATGAGCCGTC AGAAGTAGTC
AAGGCATCAA AATTTATTGG GTGGAATACT GATAGTTACA AGTGTCTTAC TGAAAGAATA
GTACATGGTT GTTCTACTTG CCAGGCTATT TGTCCGTGGT CTAAACCGGA TACCATTATA
CATGAAATAG GGCGTACAAT TGGGCAAAAT AAAGCCTTTG CACCTTTCCT CGTTAAACTG
GATGATTTTT TCTATGGTGC GAAACCGGAA GGCTTAGATG TTCCTACGTG GGCTCCTTGG
AGATAA
|
|---|
| Protein sequence | MEELNTKLSR RKFMKGLGVS SAIAAGAVLT SATTVAAAEG GIDPGEKLGA HDAYDGSSIK
RVLPANFYKE IETRSGYIGT TKIVDPGNRF DARQHGFAQI SACIGSGDFS VEKSSWGPVL
QKAFAAKKQF QSEISAELKE DYVWSGALTN SMDAMHYTLR SGNFDSIPIS GNKLTLSPEE
ATAKIKKLAY WIGLERVGIC EITEDLKPYF YSKRTTGLKT VGVPAGFKVD GIDVPWPFPY
KYCICMADAC DYNAGRGLRG PLVEATGKTS CMVSDFPAYQ METIIRSLGY DAKANAICDT
ATMSEPLAVQ AGLGELGRSG LVISPWGGNF RLTECFTNLP LIPDKPIDFG LQEFCKVCKK
CAVNCPASAI SIDDEPSEVV KASKFIGWNT DSYKCLTERI VHGCSTCQAI CPWSKPDTII
HEIGRTIGQN KAFAPFLVKL DDFFYGAKPE GLDVPTWAPW R
|
|---|
| |