Gene DhcVS_1331 details

Gene Information

• Locus tag: DhcVS_1331
• Symbol: rdhE
• ID: 8658256
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. VS
• Kingdom: Bacteria
• Replicon accession: NC_013552
• Strand: -
• Start bp: 1228924
• End bp: 1232280
• Gene Length: 3357 bp
• Protein Length: 1118 aa
• Translation table: 11
• GC content: 40%
• Product: sensor histidine kinase/response regulator
• Protein accession: YP_003330758
• Protein GI: 270308700

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAAAAA ATCAACAACT CTTATCTCAG CCAAGGTTAG GCTATAAGAA AAAAATTTTT 
CTAAGCTTTA CAATATTTTT TATAGTATTC TGGTCTATAT CTCTTGAAGT TAAATCACAA 
ACGATTACTC CCAATACTTA CTTTGAGCGT ATCAGTACTG TAAACGGCCT ATCTCAGAAT 
ACTGTCTCCA GCCTCTTGGA AGATAAATAT CATTTTATTT GGGTGGGTAC TAAAGATGGG 
CTGAACAGAT ACGATGGACA CGATTTTGAA ATCTTTCGCC ATAATCCAGA TGATCCATAC 
TCTATATCTG ATAACTATAT AAATGCTCTT CATGAAGATG AAAACGGCTG TATCTGGGTG 
GGTACCACTA GCGGCGGTCT CAATAAATAC AGCTATACTA CAGGCAAATT TACGCGTTAC 
AAAAATGCCA GCGACGACGA ATATTCGTTG AGTGATAATA GTGTAACTGC AATTTGTGGC 
GACGGGAAAG GCAACCTCTG GGTGGGGACA AAAAATGGTT TGAACTATTT TAACACCCAA 
ACCTCGCAGG TTATCCGTTA CTCAAGCGCC TTGGGCCTTT CAGATGACAG AGTAAACTGT 
CTTCTGTATT TGCCCGAACT GGACGTTGTG CTGGTAGGTA CCCGTGCTGG CATTGATGCT 
TTTAGCACAA CTACCAATGA GTATATTTAC TCTATACTCA CTGAGGATAA TTTTAACAAC 
GATGAAATCC ATTCCTTTTA TTATGATAAT GGCGTCTTGT GGGTATGCAC AGTAAAGAGC 
GGCCTGTATG GAATTTCCAA CCTGAACCAG TCTTTTCAAA GTTGCAACTA TAAATTCGGG 
CTGAATAATT TATTGGTGGA CAATGTTATT CGCGACATTT GTCAGGGTAG TAATAAAAAT 
GAGATTTGGG TAGCTACAAC ATTAGGTTTG AACAAGGTAG ATTTACTAAC AAATGAGTCA 
ACTCTTTACA CTTATGATTA CGGAGATACC CATTCTATTA GCGATAATGT GCTGACAGTG 
ATGCTGATAG ATAGTCAGGG CACTTTATGG ATAGGTACCT ACTCAGCCGG TTTGCTAAAA 
GTTGTAACGC AGAAACAGTT TTTTACCCGG TATTATTACA ACACTGCAAA TGTAAATGGG 
GTCAATTCCA GTATCGTAAA AACCATTTTT GAAGATAGAG ATGGGTTTTT ATATTTCGGA 
ACTTGCGGCG GTGTAGATAT ATATGACAGG CAAGGCTACA AGATTAAGCA TTTAGGTTAC 
AATCCGGAAG ATTCGCAGTT GTCTCTTACT GTGGATATTG TCAAGGATAT AGCACAAGAT 
ACTGAAGGTA ATATTTGGAT TGCCACTACC AACGGCTTAA ATAGATATGA CCCCCAGAAA 
GATCAAGTAA CTCGCTATTA TTATGACCGT ACAGATGAGC ATACCGTACT TTCAGATAGG 
ATAATCTGCT CACTTATGGT GGATTATACC GGCAAGTTAT GGATGGGCAC ATATAATGGC 
GTGGTATGTT GGAATCTGCA AACAGGAGAA TTCAAACATT ACGGTGAAGA ATACGGCTTG 
GCCAACAAAT ATGTATACGG TTTATGCGAA GATAAAGACG GTCAGATCTG GTTCGGTTCT 
ACCAATGGCC TCTACAAACT AAACTCGCAA ACCAATATCT TCACAAAATA CAAGCACAAT 
TCGGCCCTGA GTGGCAGTTT AAGCAATGAT AATGTGGTGG CAATATATCA GGACAGCCTT 
GGTAACCTGT GGGTAGGAAC ATATAATGGC CTTAACTACT TGGCACTTGG AACCAGCAAC 
TTTATTCAAT ACAACACCGG CAACAGTGGC CTCTCAAACA ACCTTATTTA CGGCATCACA 
GAAGATACAG AAGGATACAT TTGGGTCTCA ACCTCAAATG GTCTAAATCG CCTAAACCCA 
GAAACCCAGG AGTTTTTCCC CTTTTATGCC GAGGATGGGA CAGGGGTAAA CGAATTTTTG 
GAGAATGCTG TTCTGCGATT AAAGAATGGT ACTCTGTATT TTGGAGGGGT AAGCGGCGGT 
GTATCTTTTG ATCCACAAGA AGTGATGACC ACAAACAATG CTGTTATGGT GGTTATTACC 
GATTTGATTG TTAGTGGCAA AGAGCCACTG GATTTGGACA AACCAATCCC GGAAATCAAT 
AAAATAGAAT TGAAATCTTA TCAAAATACC TTCAGCATCA ATTTTTCGGT TATAGATTAC 
ATAAGCTCTC ATAAACAGCA AATTTACTAT CGTCTTTGCG GTTTAGAGAA AGAGTGGCAT 
CAGGTTGCCG CAAATGTACG CAGTGTTCAA TATAATACAA TAGATGCCGG CAATTACAGA 
TTCGAGATAA TGATTTTCGG TGAAAATACT CGGCAAGTTA CAGGCATGTG TTATTTAGGT 
ATTAAGGTAA GCCCTAAATT TTACCAAACG TGGTGGTTTT TCCTTTTGCT CTCACTTTTT 
GTGGCCTCGC TATTATACGG CATTGTCCGC ATTCGTGTGC GTCTTATTCT CAGACAAAAG 
TATCTCCTTG AAAAGAAAGT GGCCGAGCAA ACAGAATTAC TCCAAAATGA AGTTTATAAG 
CATGAACGAA TGGAAGAACA AGTAGCCGAA CTTTATAAAC GCGAATGCCA GTTAAATACT 
AATCTGGCAG ATGAGATGCG TAAGCGGATA GAGTTTAATC ATGCTTTGAC ACATGAATTG 
AAAACTCCAC TTACACCAAT TATTGTCACT TCTCAAATGA TGATAGATCA TGCTAGCGAT 
GATTTTATAC TGGAAGCCGC ACGGAATGTG TTTGACAGTG CTAACAATTT ATGTAATCGC 
GTAGATGAGC TTTTAGACCT GGCACGCAGC GAAATAGGTA TTTTAAACAT CAATCCGCGG 
ATGATGGACT TTGCCCAGAC ATTAAAGGTT ATAGGTAGTT TGGCTAGGAA CAACGCTGAA 
GCCAACGGAG TAAACTTTAT TTATGAAGTA CCGTCTAAAT TCCCACTTAT TTGTATAGAC 
GGGGATCGTT TGCGCCAGGT GGTACAGAAC ATGCTATCTA ATGCTCATAA ATTTACACCC 
AAAGGTGGGG AGATAGTGTT GCGCTCGTTT ATAAGTGATA AAAGGCTCTA TGTGGAGGTA 
GAAAACGACG GCATTCTTAT CAAGAGAGAA GATAGCGAAC GCATCTTTAT CCCATATTAT 
CAACAAAAAA TAGGCCGGAG CCGGTTCAGT GGTTTAGGAA TCGGGTTAGC GTTATCCAGA 
CAGTTTGTAC GCCTGCATAA AGGTGAAATG TGGCTGGAGA CACGCAAACG CAATGTTTTT 
GTTTTCTACG TACCAATAGA GTCAGAAGGT GAAACAATTG AAAGTATTAA TAATTGA 

 

Protein sequence

MGKNQQLLSQ PRLGYKKKIF LSFTIFFIVF WSISLEVKSQ TITPNTYFER ISTVNGLSQN 
TVSSLLEDKY HFIWVGTKDG LNRYDGHDFE IFRHNPDDPY SISDNYINAL HEDENGCIWV 
GTTSGGLNKY SYTTGKFTRY KNASDDEYSL SDNSVTAICG DGKGNLWVGT KNGLNYFNTQ 
TSQVIRYSSA LGLSDDRVNC LLYLPELDVV LVGTRAGIDA FSTTTNEYIY SILTEDNFNN 
DEIHSFYYDN GVLWVCTVKS GLYGISNLNQ SFQSCNYKFG LNNLLVDNVI RDICQGSNKN 
EIWVATTLGL NKVDLLTNES TLYTYDYGDT HSISDNVLTV MLIDSQGTLW IGTYSAGLLK 
VVTQKQFFTR YYYNTANVNG VNSSIVKTIF EDRDGFLYFG TCGGVDIYDR QGYKIKHLGY 
NPEDSQLSLT VDIVKDIAQD TEGNIWIATT NGLNRYDPQK DQVTRYYYDR TDEHTVLSDR 
IICSLMVDYT GKLWMGTYNG VVCWNLQTGE FKHYGEEYGL ANKYVYGLCE DKDGQIWFGS 
TNGLYKLNSQ TNIFTKYKHN SALSGSLSND NVVAIYQDSL GNLWVGTYNG LNYLALGTSN 
FIQYNTGNSG LSNNLIYGIT EDTEGYIWVS TSNGLNRLNP ETQEFFPFYA EDGTGVNEFL 
ENAVLRLKNG TLYFGGVSGG VSFDPQEVMT TNNAVMVVIT DLIVSGKEPL DLDKPIPEIN 
KIELKSYQNT FSINFSVIDY ISSHKQQIYY RLCGLEKEWH QVAANVRSVQ YNTIDAGNYR 
FEIMIFGENT RQVTGMCYLG IKVSPKFYQT WWFFLLLSLF VASLLYGIVR IRVRLILRQK 
YLLEKKVAEQ TELLQNEVYK HERMEEQVAE LYKRECQLNT NLADEMRKRI EFNHALTHEL 
KTPLTPIIVT SQMMIDHASD DFILEAARNV FDSANNLCNR VDELLDLARS EIGILNINPR 
MMDFAQTLKV IGSLARNNAE ANGVNFIYEV PSKFPLICID GDRLRQVVQN MLSNAHKFTP 
KGGEIVLRSF ISDKRLYVEV ENDGILIKRE DSERIFIPYY QQKIGRSRFS GLGIGLALSR 
QFVRLHKGEM WLETRKRNVF VFYVPIESEG ETIESINN