Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DhcVS_1292 |
Symbol | |
ID | 8658218 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. VS |
Kingdom | Bacteria |
Replicon accession | NC_013552 |
Strand | - |
Start bp | 1189131 |
End bp | 1190783 |
Gene Length | 1653 bp |
Protein Length | 550 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | |
Product | ssrA integrase |
Protein accession | YP_003330720 |
Protein GI | 270308662 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00290655 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGAGT GCAAGAGAGC AGTTGCCTAT GTTAGGGTAT CTTCGGTTTC TCAGGTAGAA GGTTACTCAT TAGATGCTCA GGAAAGACTC TTTACTGAAC TCTGTAAAAA CCGGGGATGG CAGTCAGTCC GTATATACCG GGAAGAAGGC AAGTCTGCCC ATGTGGACAG CATTCACAAG CGCCCCGTTT TCAGAAAGCT TTTAGAAGAT GCGGCTAAAG ATGAGTTTGA TGTTGTAGTT GTCCATACCC TTGACCGCTG GTCAAGGAAT CTTACAGTTA CCCTTGAATC ATTAAAGATT CTGGGTAAAC ATGGAATAGG GCTGGTTTCT ATAGTAGAAA ATCTGGATTA CTCCAAGCCG GATGGCATAC TTTTCACTCA GATGCTGGGG GCATTTGCCC AGTACTTCAG CGAAGCTCTG AGTACTCATG TCAGGAAAGG ACTTGACCAG AGAGCGTATG AAGGCAAACA CAACGGGAGC ATACCCTTTG GCTATGAATC CTGTTGGGAG ACAAATGAAA AGGGAGAAAA GAAACAACGC TGTGAGCCGG AACACCAAAG TGGTACCCAT ATCCATCCCA AAGAAGGGCA AGCTGCAGAA GGGTTATTTA GACGCTATTC CTCCGGTACA ACCACCCTAT CGCAACTGGC TGTTTGGTTA AATGAACAGG GCTTCCGTAC TAGGAATACC AAGAACCTGC CCGATGCCAA CGGCAATCTG GTTTCAGGAC CAAGACTCTT CACCAGTTCC TCAGTCAGAA GTATCCTGCA TAATCCATTC TATACCGGGC AGATAAACCA CCGGGGAAAA CTGATGCCCG GTGCTCATGA GGCCTTAATC AGTCAGGAAT TATTTGACTT GGTCCAGCTA ACCTTGAGGA AAAACTCCGG CCGCTCTGAA ACCCTCAAAA CATTACCTGA CAGGGAATAT TTGCTTAAAG GGTTGGTAAG ATGTTCACAT TGCGGAATGC CCATGTGGGC ACAAACCTAT AAGAGTGGCA AGAGCTACTA CCGTGAGCAC AAAGCTTCAA GGAGTATCAA AGAATGTCCG GGTCATGGCG GTACAATAGC CTGCCAAGTT ATAGATAAAC AGGTAAGGGA ACTGGTCTCA GCCATAGAGC TAGGACCAAG ATGGCTTGAG GAAGTGTTAT CTATAATAAG TCTCAAAGAT GAAGTAGATC GGGTCAAGAA AGAAAGAGAT CTGACTATAA CCAAACTCCA TCGTATGGCT AGAGTATTCA TGGATGGCCT TATACCGGAA GAAGAATACT CAAGGCAGAA GAAACTCTTG GAACTCAGTC TGGAATCACT GGTTGTACCT GACTATGACG CGGCTCAAGA AGCCGGGAAT CTTATTCTTA ACCTGTCATC GCTCTGGTCC AAGGCCAACT TATCAGAGCA GAGAAAGATA CTCCTTACCA TGCTGGACGG GGTCTATGTG GATGTGAAAG AGCATCGCTC GGTAATAGCA GTTAAAGCCA AGCCACCCTT CAGGCCTATC TTTCAGGTGG CAGTTTCAAA GAAAGAATCT AAGATTCATA TTTTAAACGA GCCATTAAGT CATGAACCTA GCGGCTCGTC CGTGTTTCTG GTGGAGACGG GGGAGGGTTG GACTCTCCCT GAAACAATGG TGATGGGGTT TGCAGGATGT TAA
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Protein sequence | MTECKRAVAY VRVSSVSQVE GYSLDAQERL FTELCKNRGW QSVRIYREEG KSAHVDSIHK RPVFRKLLED AAKDEFDVVV VHTLDRWSRN LTVTLESLKI LGKHGIGLVS IVENLDYSKP DGILFTQMLG AFAQYFSEAL STHVRKGLDQ RAYEGKHNGS IPFGYESCWE TNEKGEKKQR CEPEHQSGTH IHPKEGQAAE GLFRRYSSGT TTLSQLAVWL NEQGFRTRNT KNLPDANGNL VSGPRLFTSS SVRSILHNPF YTGQINHRGK LMPGAHEALI SQELFDLVQL TLRKNSGRSE TLKTLPDREY LLKGLVRCSH CGMPMWAQTY KSGKSYYREH KASRSIKECP GHGGTIACQV IDKQVRELVS AIELGPRWLE EVLSIISLKD EVDRVKKERD LTITKLHRMA RVFMDGLIPE EEYSRQKKLL ELSLESLVVP DYDAAQEAGN LILNLSSLWS KANLSEQRKI LLTMLDGVYV DVKEHRSVIA VKAKPPFRPI FQVAVSKKES KIHILNEPLS HEPSGSSVFL VETGEGWTLP ETMVMGFAGC
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