| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1268 |
|---|
| Symbol | dppC |
|---|
| ID | 8658194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 1165711 |
|---|
| End bp | 1166550 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | ABC-type dipeptide/oligopeptide/nickel transport systems, permease component |
|---|
| Protein accession | YP_003330697 |
|---|
| Protein GI | 270308639 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCA TTAGCAGTCT GCGCTCAAAC ATGCTGCTCT TTTCCGGGGC AGTGCTGCTG
GGCATATTCG TGCTTTCGGC CGTATTTGCA CCGCTGATTT CCCCGTATGA CCCGTGGACT
TACGGGCAGG CTTTTCTGCA CCCTTCTGCC CAGCATCTGC TGGGGACTAA TGATGTGGGG
CAGGACATAT TTTCCGAGCT GGTTTATTCC GCCAGAGTGT CCCTTTGGGT GGGGTTTGCC
GCTGCCTCTC TGGCTACTTT GCTGGGGGTG GCGGTAGGTA TCTGGGCTGG ATTTCGCCGC
GGTTGGCTGG ATAATGTGCT GATGGGTACG GCAGATATAT TTCTGGTTAT ACCGGCTTTG
CCTTTGGTAA TACTCCTTTC GGTATATCAG GGACCCAGTA TCTGGAATAT TATTCTGGTT
ATTGCGCTGA CGCTTTGGCC GGGGACGGCA AGGGTAATCC GCTCACAGGT AATTACTATC
CGCCAGAGCG GTTATGTGGA ATCTGCCCGC ATTATGGGGG CAAGTGAATT CCGCCTGATG
TGGCGGCATG TGCTTCCCAA TGTATTGCCA TTGGTGGCGG CCAAGTTTAT TCTGGCAGTG
GCGGTGGCTT TGCTCCTTGA GGCTTCCATG AGCTTTTTGG GTTTGGGTGA TCCCTCCCAA
AAGAGCTGGG GCATGATGCT TCATTACGCT TTTTCGCGGG GAGGTTTTGT CCAGAACCTG
TACTGGTGGT ATCTGCCGCC CGGGCTGTGC ATTACCCTGT GTATACTGGG GTTGACATTT
ATTAATATGA GCTTTGAAGA CCGTACTGAC CCGCGGCTGC AGAGGATACT GGACAGATGA
|
|---|
| Protein sequence | MNIISSLRSN MLLFSGAVLL GIFVLSAVFA PLISPYDPWT YGQAFLHPSA QHLLGTNDVG
QDIFSELVYS ARVSLWVGFA AASLATLLGV AVGIWAGFRR GWLDNVLMGT ADIFLVIPAL
PLVILLSVYQ GPSIWNIILV IALTLWPGTA RVIRSQVITI RQSGYVESAR IMGASEFRLM
WRHVLPNVLP LVAAKFILAV AVALLLEASM SFLGLGDPSQ KSWGMMLHYA FSRGGFVQNL
YWWYLPPGLC ITLCILGLTF INMSFEDRTD PRLQRILDR
|
|---|
| |