| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1253 |
|---|
| Symbol | trpD1 |
|---|
| ID | 8658180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | + |
|---|
| Start bp | 1152772 |
|---|
| End bp | 1153797 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | anthranilate phosphoribosyltransferase |
|---|
| Protein accession | YP_003330683 |
|---|
| Protein GI | 270308625 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAG AAGCAATCGG GTCTTTAGTT CTGGGCAAAT CTCTGACTAT TGAACAGTCT
GCCTCCGTAA TGGATGAAAT AATGGAGGGC AAAACCACCC CTGCCCAGAT AGGGGCATTT
CTGACGGCCC TTCGGGTCAA GGGGGAAACT GCCGAGGAAA TAGCCGGGCT GGCCAGTGTC
ATGCGGGCCA AGTCTACCCG GATAATCACC GACACCCCGG TGCTGGACAT AGTGGGTATC
GGCGGTGACG GGATAAACAC GTTCAATATA TCTACCGCCG CCGCCTTTGT TATATCCGGT
GCAGGGGTAA AGGTGGCCAA GCACGGCAAC CGGGCGGCCA GCAGCATGTG CGGCAGCGCT
GACGTACTTG AAGCGCTGGG TATAAAAATA GACCTGCCAG CCGAACAGGT AAAAACCTGT
ATAGAGCAGG CGGGTATCGG CTTTATGTTT GCACCCGTGT TCCATCCGGC CATGAAATAT
GTAGCCCCCT CCCGGCGTGA AATAGGCATC CGCACCGTGT TCAATATCTT AGGCCCGCTA
ACCAACCCGG CCTGCGCCCA GTACCAGCTT ATCGGCGTGC CTGAAATATC TCTGGGTGAC
AAGATTATTT CAGCCCTGTC CCATATGGAT ATAAAGCATG CCCTAGTGGT ACATGGCTTA
GATGGCATGG ACGAAATGTC CATCAGCGGG GATTCGGTCA TCTGGGAGCT GAAAGATAAC
GAAATAATCA AATTCCGCCA TGCACTTTCA CCGGAGGATA TGGGCTTGAA AGAGTCTCCC
CTTGAGTCTG TCAAAGGCGG CTCAGCTCAG GAAAACGCAC TTACCCTGCG TGCGGTGCTT
TCCGACGAAA AAGGACCTAA GAGAGATGTA GTCCTGCTGA ATGCGGCCGC CGCCCTGATG
GTGGCAGACC GGGTTAAAAC CATTAACGAA GGTATCAGCC TGGCGGCTAA AACGATTGAC
AGCGGGCTGG CACTGGCCAA ACTGGAATCT TTAATCAAAC TCAGCCAGTC TCAGGCAGGC
GGGTAA
|
|---|
| Protein sequence | MIKEAIGSLV LGKSLTIEQS ASVMDEIMEG KTTPAQIGAF LTALRVKGET AEEIAGLASV
MRAKSTRIIT DTPVLDIVGI GGDGINTFNI STAAAFVISG AGVKVAKHGN RAASSMCGSA
DVLEALGIKI DLPAEQVKTC IEQAGIGFMF APVFHPAMKY VAPSRREIGI RTVFNILGPL
TNPACAQYQL IGVPEISLGD KIISALSHMD IKHALVVHGL DGMDEMSISG DSVIWELKDN
EIIKFRHALS PEDMGLKESP LESVKGGSAQ ENALTLRAVL SDEKGPKRDV VLLNAAAALM
VADRVKTINE GISLAAKTID SGLALAKLES LIKLSQSQAG G
|
|---|
| |