Gene DhcVS_1242 details

Gene Information

• Locus tag: DhcVS_1242
• Symbol: dnaE
• ID: 8658170
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. VS
• Kingdom: Bacteria
• Replicon accession: NC_013552
• Strand: -
• Start bp: 1143596
• End bp: 1147108
• Gene Length: 3513 bp
• Protein Length: 1170 aa
• Translation table: 11
• GC content: 50%
• Product: DNA polymerase III, alpha subunit
• Protein accession: YP_003330677
• Protein GI: 270308619

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTGTC ATCTGCATGT CCACACCGAA TTCAGCCTGC TGGACGGTAT GTGCCGTATC 
TCCCAGCTGG TAGCCCGTGC CAAAGAACTT GGCATGGAGG CGCTGGCTAT TACCGACCAT 
GGTACTATGC ACGGCATTCC CCGTTTTTAC AAAGAGGCCA AAGAAGCAGG TATAAAACCG 
GTACTGGGCA GTGAATTTTA TCTGGCATAC GGCGACCGTA CCGCTAAAAC AGCGGCAGAT 
AAAAACTATT ACCATCTGGT GCTGCTGGCT AAAAATAACA AAGGCTATCA CAATCTTATC 
CAGTTAAGTT CACGTTCACA CATAGAGGGT TTTTACTATA AACCCCGCAT AGATAAAGAA 
CTGCTTGAAA AATATTCGGA AGGGCTGGTC TGCCTTTCGG CCTGTCCTTC GGGGGAAGTA 
CCCCGCCTGA TACTGGAAAA CCGCTTTAAC GAAGCCAGAG AAGCCGCCCT TTGGTACAAG 
AAAACTTTTG AAAACTACTA TATAGAAATC CAGCGTCACC CCATGCCGGA TTTGGAAAAG 
ATAAACAGCG TCCTTATACC CATGGCACGG GAGCTTGATA TACCTTTGGT GGCTACCAAT 
GATACCCACT ATCTGGATAA AGAAGACGCC CCTTATCATG ACCTGCTGCT TTGTATAGGC 
ACAAATGCGC TGGTCAGTGA CGAAAAACGG ATGAAGATGG AGGGTGATTA TTTTTACCTG 
AAATCACCTG AAGAAATGGC GGAAGCCTAT CAGGATATAC CGGATGCTAT TGAAAACACC 
GTCAAGATAG CCGAAATGTG CAACGTAAGC CTGGATTTCG GGCGTTTGCA CCTGCCGGAG 
ATAGATATAC CTGCCGATAA AACCCCGGAT GAGTATCTGG CGGACCTGTG TTATGGGGGG 
CTGCCCAAGT TTTATCCTGA TGCCAGCCAG GAAATACTTG ACCGCCTGAA ATATGAGCTG 
GATGTTATTA AAACCACCGA GTTTGCCAAT TACTTTCTGG TTACCTGGGA TATTATCCGT 
TTTGTAAAAG AAAAGGGTTT GTATTATGGC GTCCGCGGCA GCGCCGCTTC GTCTATAGTG 
CTGTACTGTC TGGGTATTAC CGCCCTTGAC CCTATTAAAT ACAAGCTGGT TTTTGAGCGT 
TTTCTGAATA TTGAACGCAA GGAAATGCCT GATATAGACA TGGACTTTCA GGATGACCGC 
CGTGAAGAGG TCATTGAATA TGTGGTGGGC AAGTACGGGC GTGACCATGT TTCCCAGATT 
ATTACTTTTG GTACGCTGGG GGCGAAAGCG GCGGTGCGGG ATGCGGGGCG GGCGCTTGGC 
ATGGCCTATG CGGATGTGGA CAGGGTAGCC AAGGTCATAC CCTTCTCCCT TCACATGACC 
CTGGACAAGG CTATGGAAGA AAGCACCGAA CTGAAAGATA TGTTCAATCA GGATTCGGTT 
GTCCGTAATC TGGTGGATGC CGCCCGTAAG ATAGAGGGGC TTTCCCGCCA TGCTTCCACC 
CATGCTGCCG GGGTGGTTAT TTCCAAAGAC CCGCTGACAG ACCATGTACC ACTGCAGCGC 
CTGAGCAAAG AAAATAATCT GGGTCTGGTC ATGACCCAGT ACACCATGGA AGATATTGCC 
AAGATTGGCT TGCTCAAAAT GGATTTTCTG GGGCTAGTCA ACCTGAATAT ACTTGGCAAG 
GCCTGTGCGG TTATCAAAGA ATACACCGGG CAGGATATTG ACCCCCTGGC CATACCCCTT 
GACGATGCAA AAACCTTTGA GCTGCTGGCG GCCGGCGAAA CCGTGGGTGT TTTCCAACTG 
GAAGGCACGG GCATGCGCCG CTATATCAAA GAGCTGAAAC CGACTGTGTT TTCAGATATA 
GGTGCTATGG TGGCTTTATA CCGTCCCGGC CCTATGGAAC AGATACCCCG TTTTATCAAA 
TCAAAACACG GGCTTGAGCC TATTACCTAC CCCCACCCCG CTCTTGCACC CATACTGGAA 
GAAACTTACG GTGTTATTGT TTACCAGGAG CAGGTGCTGT TTATAGCCCA GACCTTCTCC 
GGCTATACCC TGGGACAGGC GGATATACTC CGCAAGGCCA TGGGTAAGAA GATTGCGGCC 
GTTATGCAGA AACAGAAAGC CAATTTTATT GACGGGGCTT TGAAAAACGG CTATACCCCT 
GAAATAGCCG AAGAGGTGTT TGCTCTGGTT GAGCCATTTG CCGGTTATGC CTTTAACAAG 
GCTCATGCCA CCAGCTATGC CCTTATTGCC TACCAGACAG CTTACTTAAA AGCCAACTAT 
CCGGTTGAGT ATATAACCGC CTATCTTCAG GCATTTTGCG ATGTGACTGA AAAAGTGGTA 
ACCGCTGTTA CCGAAGCCCG CCATATGGGG ATAGAGGTGC TGCCGCCGGA TATTAACCGT 
AGCGGGGTTA ATTTTGAAAT AGAGCAAAAC GAAGACGGGG TTAAGAAAAT CCGCTTTGGG 
CTGGCGGCGG TCAAGAATGT GGGGGTGGCG GCGGTGGAAC CGATTGTGGC AGAGAGGAAA 
GCCAACGGGG ACTATCTGTC TGTTGAGGAT TTATGCCGCC GGGCGGAAGG GTCGTCGCTT 
AACAAAAGGG TAATGGAAAG TCTGGTCAAA GCCGGGGCAC TGGACAGCCT GGGTGACCGA 
GGGACTCTCC TTTTCAATCT GCCGAATATA CTTTCCCTGG CTCAGCGGGA ACAGAAGCTG 
AAAGATTCAA ACCAGACTAC CATGTTTGAC CTTTTCGGTC AGCAGTCACC CATGCCCATG 
CCCAGTCTGG AAATGGCGGA ATCACCGGTG ACTACCCGTG AAAAGCTCCA GTGGGAAAAA 
GAACTGGTAG GTATATTTAT ATCTGAACAT CCGTTTACCC CCTATGCCAG TTCGGCTCAG 
GAGGTAACTA CCGCTCTGTG CGGACAGATA GATGAGGAAC TCCACAACCA GCCGGTAACG 
GTGGCGGGAA TGGTGGCTTC CGTACGGGTT TCAGCCACCC GTGAAGGCAA GCCGTTTGTT 
ATGGCGGAAA TAGAAGATTT GGTGGGGCGG GTGGAAGTAG CCGCCTGGCC TAAAGTATAT 
GCAGCAACTA AAGCCCTCTG GGAGGAGGGA AATATTCTAT TAGTGGAAGG TAAAGCTGTG 
GTTCGTGGAG ACAGGGTATC AATTCATGCG GAAAAAGTAA GCCGGTATCA GCCGGAAACA 
GATAAAAAAG CGGCCCCGGT ATTTATAAAC GCCCCCCAGC CGAAGGTGGA AGACAAAGAG 
CCTCCTGCCC CCCAGCTGCA GCGGCTGGTA GTATGTATTC AGCAGACAGA CAACGAGGGA 
CGGGATATTG ACTGCTTGAA TGAGGTGGTG GACACTCTGC GTCAGTACAC GGGTGAAACC 
GAAGTGCGGT TGTGTGTGGT AAACCACGAA CGGGTTTTCA TATTGAAAAT GCCGGATATC 
TGGGTATACT ATTGTCCGGA GCTTAAAAGC AAGCTTGTGG CCCTGGTGGG CAGTGCCAAT 
GTGAGGCTGG AGAATAATGC CCCAAGCGGA TAA 

 

Protein sequence

MFCHLHVHTE FSLLDGMCRI SQLVARAKEL GMEALAITDH GTMHGIPRFY KEAKEAGIKP 
VLGSEFYLAY GDRTAKTAAD KNYYHLVLLA KNNKGYHNLI QLSSRSHIEG FYYKPRIDKE 
LLEKYSEGLV CLSACPSGEV PRLILENRFN EAREAALWYK KTFENYYIEI QRHPMPDLEK 
INSVLIPMAR ELDIPLVATN DTHYLDKEDA PYHDLLLCIG TNALVSDEKR MKMEGDYFYL 
KSPEEMAEAY QDIPDAIENT VKIAEMCNVS LDFGRLHLPE IDIPADKTPD EYLADLCYGG 
LPKFYPDASQ EILDRLKYEL DVIKTTEFAN YFLVTWDIIR FVKEKGLYYG VRGSAASSIV 
LYCLGITALD PIKYKLVFER FLNIERKEMP DIDMDFQDDR REEVIEYVVG KYGRDHVSQI 
ITFGTLGAKA AVRDAGRALG MAYADVDRVA KVIPFSLHMT LDKAMEESTE LKDMFNQDSV 
VRNLVDAARK IEGLSRHAST HAAGVVISKD PLTDHVPLQR LSKENNLGLV MTQYTMEDIA 
KIGLLKMDFL GLVNLNILGK ACAVIKEYTG QDIDPLAIPL DDAKTFELLA AGETVGVFQL 
EGTGMRRYIK ELKPTVFSDI GAMVALYRPG PMEQIPRFIK SKHGLEPITY PHPALAPILE 
ETYGVIVYQE QVLFIAQTFS GYTLGQADIL RKAMGKKIAA VMQKQKANFI DGALKNGYTP 
EIAEEVFALV EPFAGYAFNK AHATSYALIA YQTAYLKANY PVEYITAYLQ AFCDVTEKVV 
TAVTEARHMG IEVLPPDINR SGVNFEIEQN EDGVKKIRFG LAAVKNVGVA AVEPIVAERK 
ANGDYLSVED LCRRAEGSSL NKRVMESLVK AGALDSLGDR GTLLFNLPNI LSLAQREQKL 
KDSNQTTMFD LFGQQSPMPM PSLEMAESPV TTREKLQWEK ELVGIFISEH PFTPYASSAQ 
EVTTALCGQI DEELHNQPVT VAGMVASVRV SATREGKPFV MAEIEDLVGR VEVAAWPKVY 
AATKALWEEG NILLVEGKAV VRGDRVSIHA EKVSRYQPET DKKAAPVFIN APQPKVEDKE 
PPAPQLQRLV VCIQQTDNEG RDIDCLNEVV DTLRQYTGET EVRLCVVNHE RVFILKMPDI 
WVYYCPELKS KLVALVGSAN VRLENNAPSG