Gene DhcVS_1234 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhcVS_1234 
Symbol 
ID8658162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides sp. VS 
KingdomBacteria 
Replicon accessionNC_013552 
Strand+ 
Start bp1139392 
End bp1139973 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content48% 
IMG OID 
Product2 -5 RNA ligase 
Protein accessionYP_003330669 
Protein GI270308611 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.00152481 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCTGAAG AACTTGTCCG CACGTTTATT GCCATAGAAC TGCCGCCTGA GCTTAAAACC 
GCACTCGGCA GTTTCCAGAA TTCCCTTTCC ATACCCACCC AAGCTGTAAA ATGGGTAAAC 
CCCGAATCAA TGCACCTAAC CATCAAATTT TTGGGGGATA CACAGCTAGG CCAAATATCA 
AATATCATAA AAGGGCTGGA GAAAGCCGCG CAGGTTTGCT CTTCCTTTTC CCTATGCACC 
AACCGTATAG GGGCTTTCCC CTCACTTTCA AGCCCAAAGA TAATCTGGCT GGGGCTGGAG 
GGTGAGATAG AAAAACTAAA TACCCTCTTT GCGGAGGTTG AAAAAAATAT TTCAGGGCTG 
GGATTTCCGG CAGAACAAAG GGAATTCGCC CCCCACCTGA CCTTAGGACG TCTTAGGGAA 
AGTGCTTCCA AAATTGACCT GCAAACCGCT GCCGAAACCC TTAAAACCAC ACCCCCTGTT 
CCTAAAACCA GTTTCAAAGC CACCCATATC CATCTCTTTA AAAGCCAGCT TTTACCCGCA 
GGGCCAATAT ACACCAAGCT GGCCAAAATC AGCCTTGCAT AG
 
Protein sequence
MAEELVRTFI AIELPPELKT ALGSFQNSLS IPTQAVKWVN PESMHLTIKF LGDTQLGQIS 
NIIKGLEKAA QVCSSFSLCT NRIGAFPSLS SPKIIWLGLE GEIEKLNTLF AEVEKNISGL 
GFPAEQREFA PHLTLGRLRE SASKIDLQTA AETLKTTPPV PKTSFKATHI HLFKSQLLPA 
GPIYTKLAKI SLA