| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_12 |
|---|
| Symbol | pyrF |
|---|
| ID | 8656971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 13899 |
|---|
| End bp | 14711 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | orotidine 5-prime-phosphate decarboxylase |
|---|
| Protein accession | YP_003329521 |
|---|
| Protein GI | 270307463 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAGA TAGTAATTGA TCCCATAACG AGGATTGAAG GTCATCTAAA AATCGAAGCC
ACCGTAGACG GCGGTGAGGT TAAAGATGCC AAATGTGTCG GCACTCTGTT CCGCGGCTTT
GAAATATTTA TGAAAGACCG TGACCCGCGT GATGCTGTTC ATATTACCCA GCGTATCTGC
GGCGTCTGCC CCACCTCCCA CGGCACTACC GCCGCTTTAA ACTTGGACTC CGCCTTTGGC
GTAGCTGACA AAATACCGAA TAACGGGCGG ATACTCCGCA ACCTTATTCA GGGTGCTAAC
TATATTGCTT CCCATATAGT TCATTTTTAC CATCTGGCCG CTCTGGATTT CGTAGACGTA
ACCGAAGTAG CCGATTATGA TGGTACTGAT CCTGAACTTT TAAAAGTAAA GGATTTTATT
GCCCGGGCTC TGGCTGCCGG TGATATGTCC ATGCTGGCTC CCTTCTACCC CAGATACGAA
GGTGATTACC GCCTTCCCAA GAAGGTTGCC CAGGCCGCAG TTGCCCATTA TGTTGAAGCT
TTGAACATGC GCCGTCTGGC TCACGAACTT TCCGCTATTT ACAGCGGACG CATGCCGCAC
AGTGTAGCAG TGGTAGCCGG CGGTGTTACT TCACACCCCA GCATAGACAG CATCTCAAAC
TTTATGAGCA AGCTGAATAC CCTGCGTCAC TTTATTGACA ATGTATATCT GCCTGACGTT
ATTGCAGTAG CCGAAACCTA TCCTGATTAC TTCGGTATCG GTGTGGGTTG CGGCAACCTG
CTCAGCTATG GTGTGTTTGA TCTTGAAGCA AACGGCACTA ATCTGGCTAC CCGCCAGAGA
CTTTTCACTC AGGGCGTGGT CTCCGCTTCT GACCTGAAAC TCCGCACCTT TGATCCCAAC
AAGATTACCG AATCAATCAA ATACAGCTGG TTCAGCGGTG AAACCAATGA ATACCCCCTG
AACGAAGTAA CCGAACCTGA ATTTACCAAG CCGGACGGCT ATTCCTGGCT GAAAGCCCCC
CGATACGAGA ATACCCCCTA CGAAGTAGGC CCTCTGGCTC GTATGGTGGT TAACTACGTA
GCCGGTGACC CCGTGGTTCA GAAGATGGTA AACAATACCT TGGCTCATTT CGGTGCCGGC
CCTGCCGCCC TTTTCAGCAC ACTCGGCAGA CATGCCGCCC GTGCCCTTGA ATGCAAGATC
GTAGCTGATG AAATGGTCAA GTGGGCTATG GAACTCAAGA TTGGCGAACC TGTGTGCGCT
GATTACGAAA TACCCGAAAG TGCCGAAGGC ATGGGTCTCT GGGAAGCTCC CCGCGGTGCT
CTTGGCCACT GGATAAAGAT TGAAAACCAC AAGATAAGCA ACTATCAGTG CGTAGTGCCC
TCCACTTGGA ACTGTTCACC CAAAGATAAT CAGGGTGTTT ACGGTCCTGT TGAGCAGGCT
CTTGTCGGTA CTAAGGTACG TGATAACGAT AATCCGTTTG AGCTGGTTCG CATTGTCCGC
TCGTTTGACC CGTGTCTGGC TTGTGCCGTT CATCTGGTCT CACCCACCGG CAATGAAATC
AGCCGCTTCC GCGTTTACTA A
|
|---|
| Protein sequence | MKFLEKLKQA GNRNKSLLCV GLDPDPKLMP VGMTALEFNR EIIAATAPFV CGYKLNLAFY
EALGKQGWEM LSETCNLIPP ELLTIADAKR GDIGNTSKAY ARAVFDELDC DGVTVSPYLG
YDSLEPFIEY QDKGIFILCR TSNHGSTDFQ MLKTEYLGQK RFLYEVVADK ALQWNRYENI
GLVVGATQQE ELKNLRLSYP KLPFLIPGIG AQGGDLKATV ENGTNPNGEL ALICASRGIL
YARSGSEFAQ GAAEAANQMR DAINHYRKRF
|
|---|
| |