| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1081 |
|---|
| Symbol | typA |
|---|
| ID | 8658012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | + |
|---|
| Start bp | 1005259 |
|---|
| End bp | 1007127 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | GTP-binding protein |
|---|
| Protein accession | YP_003330526 |
|---|
| Protein GI | 270308468 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00893132 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTGCCCTT GTATCCAGGC TATTTTCAGG AGAAAGATTT TGGAAAACTA CCAGAGAACA
GATATCCGTA ATATTGCCAT TATTGCTCAC GTAGACCACG GCAAAACCAG CCTGGTGGAC
GTGATGCTTA AACAAAGCCG TATTTTCCGT GAAAACCAGC ATGTTGGCGA ACTTATCATG
GACCGCAATA CTCTGGAACG GGAAAAAGGA ATTACTATCC TGGCAAAAAA CACAGCCATA
ACCTACCGCG GAGTAAAAAT AAACATTATC GATACCCCTG GACATGCTGA TTTTTCGGGT
GAAGTTGAGC GGGTGCTGAA CATGGCTGAC GGCTGTCTTT TGGTAATTGA CAGCATTGAC
GGCCCTATGC CCCAAACCCG TTTTGTGCTT AGGGAAGCCA TGCAGAAAAA GCTGAAGCCT
ATCGTAGTTA TAAACAAGAT AGACCGCGAA AATGCCCGCC CTGAAATAGT GCTGGGGCTG
GTACAGGACT TGTTTCTGGA ACTGGCTACC ACTGAGGAAC AACTGGACTT CCCGGTAGTT
TATACTTCTG CCCGCGAGGG TTATGCTGTA AATACCCCCG GTACCAAAAG CACTGATCTT
ATCCCCCTGT TTGAGTGCAT ACTTGCCAAA ATCCCCCCTC CCAGCATTGC CCAAGGGGAA
TTCCAGATGC TGATTTCTAA CCTGGACTAT GATACCCACA AAGGACGGAT AGCTATCGGA
CGTATCCAAC GGGGCAAAAT ATGTTCCCAT GACCGGGTTG TTAATATAGA TTCCCAAAAT
AAAGCCCATT CTTTTGAAGT AGGTCAGGTA TTTACCTTTA TGGGACTGGG CAAACAGGAA
GTGGAATGTG CCGAAGCGGG TGAAATAGTA GCCATTACCG GTCTGGAAAA CGCATCTATA
GGGGATACTG TCGCCAGCCC TCTTCAACCC GAAGCCCTGC CCCGCATTGA AATAGGTGAA
CCTACTGTCC GCATGACTTT CGGGGTAAAC ACATCACCCT TCGGTGGACG GGATGGCAAA
TACTGCACCT CACGCCAGCT TCGGGAAAGA CTTTTCCGCG AGCTTGAGAC CAATATAGGG
TTGAGGGTTG AAGAAACCGA TTCACCGGAC TCATTTTTGA TTTCCGGACG GGGCGAACTC
CACCTGTCTA TACTGGTGGA AACTATGCGC CGTGAAGGAT ATGAGTTTGA AATATCCAAA
CCGGAAGCTA TTACCAAGAA TATTAACGGC AAAGTCTATG AACCGGTAGA AGCTTTGACG
ATAGATGTCC GCGAGGATTT TGTAGGAGAG GTCACCGAGC TTCTGGGTAA ACGGCAGGCA
CGTATGACCG ATATGCACAA TGACGGGGAA GGAAACGTAA GGCTGGAATA CAATATACCT
ACCCGCGGCC TTATCGGCTT CCGCAACTCT TTCCTGACAG CCACCAGAGG CACGGGCGTA
CTGAACAGCC AGTTTCTGGA TTTTCAACCC TGGTGCGGTG AAATAGAACA AAGCCGGACC
GGCGCTTTGG TAGCAGCCGA AGCAGGTTTA TCCTGCACTT ACGGGCTTAA CAACTCACAG
GAACGTGGCA TACTGATGAT AGACCCCAAC ATACCCGTTT ACGAGGGTAT GATAGTCGGT
CTTCATGCCA GAGGGCTTGA CCTGGCGGTA AATGTCTGCA AACAAAAGAA GATGACCAAT
ATCCGTTCGT CTACCTCGGA CATTGCCATA AAGCTGGTAC CGCCTATGAA ACTAAGTCTT
GAACAGTCTA TGGATTTTAT CGCTGATGAC GAACTGGTTG AGGTAACTCC CAAGGGTATC
CGCCTGCGGA AAAAGATACT GGATACCGAG ATGCGGCTTC GGGCACGCAA ACGCACTGAA
AATAATTAA
|
|---|
| Protein sequence | MCPCIQAIFR RKILENYQRT DIRNIAIIAH VDHGKTSLVD VMLKQSRIFR ENQHVGELIM
DRNTLEREKG ITILAKNTAI TYRGVKINII DTPGHADFSG EVERVLNMAD GCLLVIDSID
GPMPQTRFVL REAMQKKLKP IVVINKIDRE NARPEIVLGL VQDLFLELAT TEEQLDFPVV
YTSAREGYAV NTPGTKSTDL IPLFECILAK IPPPSIAQGE FQMLISNLDY DTHKGRIAIG
RIQRGKICSH DRVVNIDSQN KAHSFEVGQV FTFMGLGKQE VECAEAGEIV AITGLENASI
GDTVASPLQP EALPRIEIGE PTVRMTFGVN TSPFGGRDGK YCTSRQLRER LFRELETNIG
LRVEETDSPD SFLISGRGEL HLSILVETMR REGYEFEISK PEAITKNING KVYEPVEALT
IDVREDFVGE VTELLGKRQA RMTDMHNDGE GNVRLEYNIP TRGLIGFRNS FLTATRGTGV
LNSQFLDFQP WCGEIEQSRT GALVAAEAGL SCTYGLNNSQ ERGILMIDPN IPVYEGMIVG
LHARGLDLAV NVCKQKKMTN IRSSTSDIAI KLVPPMKLSL EQSMDFIADD ELVEVTPKGI
RLRKKILDTE MRLRARKRTE NN
|
|---|
| |