Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DhcVS_1064 |
Symbol | mfd |
ID | 8657995 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. VS |
Kingdom | Bacteria |
Replicon accession | NC_013552 |
Strand | - |
Start bp | 988880 |
End bp | 992344 |
Gene Length | 3465 bp |
Protein Length | 1154 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | |
Product | transcription-repair coupling factor (superfamily II helicase) |
Protein accession | YP_003330509 |
Protein GI | 270308451 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.566316 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGTTTGG AGAAGATATT GAATCTTAGC GGTTTGTTGC CTCTTATAGA CCAAAGCCCG TTATTTGACA GCCTGTTTCA AGCTCTGGAT AGGGGTGAAG CTGATATTTC GGTTTTAGAT GCGGGGCGGG GGTTTAGTCT GGCATCTGTA TACCGCAGGT TAAAATGCCC CATGCTGGTT ATTACCTCGC AGCCGGAGCG GGCAAGGGAA CTTTTGGAGC AGATAGCTGC TTATACAGGA GAGGAGCCGG GTTTTCTGCC TGACCCCAGT CTGCTGCCTT ATCAGCGGGC TGTTTCTGAC CGTAATTCTT CACTGGAAAA GATGCGGCTG GCAGGCATTC TGGGCGGGTA TATCCGCAGC GGAGATTCAC GGATAATAGT TACGGCTGTG CCGGCTTTGC TGCAGCGGTA CGTTTCTCCG GAAATATTTA AACAATCTTT TATACAAGTC TGGGCCGGGT TGGAAATAGA ACCCCAGGAC TTAATCAGCC GTTTTCAGCA GTTGGGATAC CGTCAGGAAA GCATAGTGGA GATACCGGGT ACATATTCCC ATCGGGGCGG CATACTGGAT ATTTTCCCTC ATACCGAAGA TAATCCGGTA AGGCTGGAAT TTTTCGGTAA TACTCTGGAA AGTCTGCGTA ATTTTGATCC CAAGAGCCAG CGTTCGGGAA AAGCGGTAAA TGAGCTTACT ATAAGCCCCG CAAGTGAGCT TTTTCATCTG GGGCAGCTGA CCCGTAAGGA CATTAATAAC CGGCTGGATA TTTTGCTCAC AGATAATCTA AATCCCGAAT TCAGCCGTAC TCTGTCAGCA GATATAAACC ATCTTAACGA GGGCCTGAAA CCCGAATACC CCGAATTTTT CGCTCCTCTT TTTAATACCT CAAGCATACT TGATTACCTT CCGTCAGATG CTCTGGTAGT GCTGGATGAA CCTGCCTCCA TAGAGCAGGC AGCTTTTCAT CTGGATAAAG AAGCCGAAGA ACTGCGCTCT GACCGTCTGT CACATGGTGA ACTTCCTTCC GTTTATCCCC GTCCGTATTT TAACTGGGCA GAGATATCCG CCATGCTGAA AACCAAAAAA CGGCTTATTA TGGCCTCCTT CGGGCGGGAG AGTGAGTCTT TAAAGCTGGA TTTTGCTTCC CCGGATAATT ATGTAGGGCG TTTATCCGGT TTGTATGAAA AATTGCCGGA ACTAAAAGGA CACACTGGCA GAGTGGTTAT TGTCAGTCAT CAGGCCGCCC GTCTAGCTGA GCTTTTAAAA GAGCGCAGTA TTTTGGCGGT TGTCCAGACA GATGTATTAA CCCCCCCTCC GCCTGCCAGT CTCAGTCTGG TTCAAGGGAT ACTGGGTTCC GGCTGGAGTT TAAGTGATAA CTTGCATATT CTCACTGATG CCGAACTTTT CGGCTTTGTA AAACAGCGGC GTCTACCTTC CAAGCGTCCG TCTGCCCGTA AGGGTGTGGT GCTGGATATA AAACCGGGTG AATTTGTGGT GCATATAGAC CATGGTGTGG CTTTGTTCAG CGGGGTCAGC CATATGAACC GTGATGGTAT GGATAAAGAG TACCTGATAC TCCAGTATGC CGGCGGTGAC AAACTTTATG TGCCGACAGA CCAAATGGAC AGAGTAAACC GTTTTATAGG CAGCGGAGAT GAACCGCCGT CTTTGCACCG CTTGGGTACT CAGGAATGGC AAAGGGCAAA AGAAAAGGCC AGTGAATCCG CGGAGGAAAC TGCCCGCGAA CTCCTTGATA TCTATGCTAA ACGCGAGTTG GCAAATGGCT ATGCATTTTC GGCAGATACT GTCTGGCAGC AAGAAATGGA GGCATCCTTT CCGTATGTGG AAACTCCTGA CCAGCTGAAA GCTCTGTGCG ATATCAAAGA AGATATGGAA AAAACCCGCC CTATGGACAG GCTTATACTG GGGGATGTTG GCTACGGTAA AACCGAAGTA GCTATACGGG CAGCTTTCAA GGCGGTCATG GACGGCAAGC AGGTGGCAGT GTTGGTACCT ACTACAGTGC TTGCCCAGCA GCATTACACT ACTTTCCGTG AGCGGCTGGC TACTTTTCCG GTCAAAGTAG AGGTGCTTAG CCGTTTTCGC AGCCAGTCCG AACAGAAAGA AGTGGTTGAA AATATGGAAA AAGGCGAAGT GGATATCTGC ATAGGTACTC ACCGCCTGCT TCAGGCAGAT ATAAAGTTTA AAGATTTGGG ACTGGTAATT ATAGACGAAG AGCAACGCTT CGGGGTAGCG CACAAGGAAT TTTTCAAGAA ACTGCGTGCC CAGGTAGATG TGCTTACCCT TAGTGCAACA CCCATTCCCC GTACTTTGCA TATGTCTATG GTTGGGGTAA GGGATATGAG TGTTATAGAA ACTCCGCCCG GTGAACGCCT GCCTATTAAA ACCGTAGTAG CTGCTTTTGA TGAACGGCTG ATACGTGAAG CTATACTGCG GGAGATGGAA AGGAACGGGC AGGTATTTTT CGTGAGTAAC CGGGTAATGG GCATAAATTT ACTTGCAGAG CGTATTCAGA AGCTTGTCCC CGAAGCCCGT ATAGGTATCG GGCACGGGCA GATGGCTGAA GATAAGCTAG CCGCCGTAAT GGCTGATTTT GTGCGGTATG AACTGGACGT GCTGGTATGT ACTACTATTA TAGAATCCGG AGTGGATGTG CCGAATGCCA ATACCCTGAT TATAAACAGG GCAGACCGCT TTGGGCTTAC CCAGCTTTAC CAGCTGCGGG GGCGGGTGGG GCGGAGCTCC CAGCTGGCAT ATGCCTATTT CCTGTATGAC AAAGAAAAAC ACTTAAGCGG TGATGCTGAA AAACGCCTGA AAACTATTTA TGAAGCAGCT GAACTTGGGG CAGGATATGG TATTGCCATG AAAGATTTGG AAATAAGGGG TGCAGGAACA CTGCTTGGCG TAAAACAATC AGGTTATATA AATTCGGTCG GTTTCAACCT ATACACCCAG ATGCTGTCAG AAGCAGTAGC CGGACTGAAA GCTGCCGGAA GCGGGCTTTC CAAAGAAGAA ATACGCATCC AGAATATGCC TGCCCCCAAG CTGGATTTAC CCTTAGACGC ATTTATACCC GAATACTATA TCCAGGATCT GGATTTACGT TTGTCTATTT ACCAGCAGTT ATCAACTCTG GCCAGTCTGG CAGGCGTTCT GGAAAAGGAA AAAGAACTGA CAGACCGGTT CGGGGTAATG CCAAAGGAAC TTGAAAATCT GCTATATTCA TTCCGTTTAC GTTTGCTGGC TAAAAAAGCC CACGTGGAAA CTATCGTAAC CGAAGGCAGC CAGATAGTAG TGCGGATGCT GGGCGGGCTG ATAATAAATA AAGCTTTGCT TGAACCGCTT AAAGCGGGAG TGGTGGCAGG GCGTAATCAG GTGGCTATCC AGTTCAGAAA GACTGGCGAT AGTTGGAAAG AAGTGTTAGA AGAGATTATC TGGCGGCTGG GGTAG
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Protein sequence | MCLEKILNLS GLLPLIDQSP LFDSLFQALD RGEADISVLD AGRGFSLASV YRRLKCPMLV ITSQPERARE LLEQIAAYTG EEPGFLPDPS LLPYQRAVSD RNSSLEKMRL AGILGGYIRS GDSRIIVTAV PALLQRYVSP EIFKQSFIQV WAGLEIEPQD LISRFQQLGY RQESIVEIPG TYSHRGGILD IFPHTEDNPV RLEFFGNTLE SLRNFDPKSQ RSGKAVNELT ISPASELFHL GQLTRKDINN RLDILLTDNL NPEFSRTLSA DINHLNEGLK PEYPEFFAPL FNTSSILDYL PSDALVVLDE PASIEQAAFH LDKEAEELRS DRLSHGELPS VYPRPYFNWA EISAMLKTKK RLIMASFGRE SESLKLDFAS PDNYVGRLSG LYEKLPELKG HTGRVVIVSH QAARLAELLK ERSILAVVQT DVLTPPPPAS LSLVQGILGS GWSLSDNLHI LTDAELFGFV KQRRLPSKRP SARKGVVLDI KPGEFVVHID HGVALFSGVS HMNRDGMDKE YLILQYAGGD KLYVPTDQMD RVNRFIGSGD EPPSLHRLGT QEWQRAKEKA SESAEETARE LLDIYAKREL ANGYAFSADT VWQQEMEASF PYVETPDQLK ALCDIKEDME KTRPMDRLIL GDVGYGKTEV AIRAAFKAVM DGKQVAVLVP TTVLAQQHYT TFRERLATFP VKVEVLSRFR SQSEQKEVVE NMEKGEVDIC IGTHRLLQAD IKFKDLGLVI IDEEQRFGVA HKEFFKKLRA QVDVLTLSAT PIPRTLHMSM VGVRDMSVIE TPPGERLPIK TVVAAFDERL IREAILREME RNGQVFFVSN RVMGINLLAE RIQKLVPEAR IGIGHGQMAE DKLAAVMADF VRYELDVLVC TTIIESGVDV PNANTLIINR ADRFGLTQLY QLRGRVGRSS QLAYAYFLYD KEKHLSGDAE KRLKTIYEAA ELGAGYGIAM KDLEIRGAGT LLGVKQSGYI NSVGFNLYTQ MLSEAVAGLK AAGSGLSKEE IRIQNMPAPK LDLPLDAFIP EYYIQDLDLR LSIYQQLSTL ASLAGVLEKE KELTDRFGVM PKELENLLYS FRLRLLAKKA HVETIVTEGS QIVVRMLGGL IINKALLEPL KAGVVAGRNQ VAIQFRKTGD SWKEVLEEII WRLG
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