| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xcel_3067 |
|---|
| Symbol | |
|---|
| ID | 8650616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylanimonas cellulosilytica DSM 15894 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013530 |
|---|
| Strand | - |
|---|
| Start bp | 3399214 |
|---|
| End bp | 3400710 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003327627 |
|---|
| Protein GI | 269957838 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCC CCACCCAGAC CACCGGCGCC CCGCCGGACG TCACGCCGTC CGGCACCGTC
GGTGCCCGTG CCCTGACCGG CAAGCTCGGC CCGGTCGCCA TCGTCTTCAT GGTCGTCGCG
GCCGCCGCGC CGCTCACCGT CGTCGGCGGT GCGGCGCCGC TCGGGATCCT GCTCGGCAAC
GGTGTCGGCT TCCCGGCGTT GTACGCGCTG AGCGGCGTGA TCCTGCTGTG CTTCTCGGTG
GGGCTGGCCG CCATGACGCG CGAGGTGCCC CGCCCGGGAG CGTTCTTCTC GTTCGTCGGC
TACGGGCTCG GGCGGCGTCC CGGGCTGGCC GCCGCGTACC TGGCCCTGCT GACGTACACG
ACCATCCAGG TGTCGGTGTA CGGCTACGTC GGCTTCATCC TGTCGGGCAC GATGGCGAGC
CTCGGCCTGC CTGTGCTGCC CTGGTGGCTG TGGGCGCTCG TCGTCGCCGC CGTCGTCGGC
GTGCTCGGCT ACCGGCACAT CGACCTGTCG TCGAAGGTGC TGGGCGTGCT GCTGGTCGGC
GAGGTCGGCA TCGTGCTGGC CGTCGTCGCC GGGGTGCTGG TCACGGGCGG CGCCGAGGGC
CTGTCGGCCG CACCGTTCGA GCCGTCCACG GTCATGTCGG GCTCGCCCGC GATCGGCCTG
ATGTTCGCGA TCGCCGCGTT CATCGGCTTC GAGGCGACGG CCATCTTCCG TGACGAGGCC
CGTGACCCCG AGCGCACCAT CCCGCGCGCC ACCTACGGCG CCGTCATCGG CATCGCGATC
TTCTACACGC TGGCCTCGTG GGGCCTGGTC ATGGCGTGGG GTCCCGGTCA CGTCGTCGAC
GTCGCCGCGG CCGACCCGGG CGCCATGATC GTGACCACCA CGGCCAAGTA CCTCGGCACC
GCGGGGGAGG TGGTCGTCCA GGTGCTGCTG GTGACGAGCA TGCTCGCCTG CGTCCTGAGC
TTCCACAACG TCATCACGCG CTACCAGCAC ACGATGTCGA ACGCCGGCCT GCTGCCGTCG
GGTGTGGGTG CGGTGCACGC GAAGCACCTG TCGCCGTACG CCTCCTCGCT CGTGCAGACG
GCGACGTCGG TGCTGCTCGT GGGCCTGTTC GCGGTGCTGG GGCTCGACCC GGTGCTGCAG
GTGTTCACGT GGTTCGCCGG CGTGGCCACG CTCGCCATCG CGATCCTCAT GGCCGTCACG
TCGCTGGCCG TCATCGTGTG GTTCCGCCGG TCGCGCGGCC GCACCCGTCG CTGGAACACC
CTCGTGGCAC CTGCCCTCGG TCTGCTCGGG CTGGCGGTCG CGGCCGTCGC GATCGTTGCG
AACTTCCCGC TGCTCGTGGG CGACGTCGAC GCCTCCGGCG CCCAGCGGTT CGGTCTCGTC
TCGGCCGTGC TGCTCGCCGT GGTGGTGCTG TGCCCGCTCG TCGGCTGGGT GCAGGCCACC
GCCCTGCGCC GTCGGCGCCC CCAGACCTAT GCCCGCATCA CCGACGCCAT CGGCTGA
|
|---|
| Protein sequence | MSAPTQTTGA PPDVTPSGTV GARALTGKLG PVAIVFMVVA AAAPLTVVGG AAPLGILLGN
GVGFPALYAL SGVILLCFSV GLAAMTREVP RPGAFFSFVG YGLGRRPGLA AAYLALLTYT
TIQVSVYGYV GFILSGTMAS LGLPVLPWWL WALVVAAVVG VLGYRHIDLS SKVLGVLLVG
EVGIVLAVVA GVLVTGGAEG LSAAPFEPST VMSGSPAIGL MFAIAAFIGF EATAIFRDEA
RDPERTIPRA TYGAVIGIAI FYTLASWGLV MAWGPGHVVD VAAADPGAMI VTTTAKYLGT
AGEVVVQVLL VTSMLACVLS FHNVITRYQH TMSNAGLLPS GVGAVHAKHL SPYASSLVQT
ATSVLLVGLF AVLGLDPVLQ VFTWFAGVAT LAIAILMAVT SLAVIVWFRR SRGRTRRWNT
LVAPALGLLG LAVAAVAIVA NFPLLVGDVD ASGAQRFGLV SAVLLAVVVL CPLVGWVQAT
ALRRRRPQTY ARITDAIG
|
|---|
| |