| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xcel_1991 |
|---|
| Symbol | |
|---|
| ID | 8649521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylanimonas cellulosilytica DSM 15894 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013530 |
|---|
| Strand | - |
|---|
| Start bp | 2146998 |
|---|
| End bp | 2148647 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
|---|
| Protein accession | YP_003326568 |
|---|
| Protein GI | 269956779 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.918536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAAG GTCGGTTTGT GGCGTCCACG TCCCTAAGTA CCGCACAGCA GAACATCACG
CTGCCCCGCG AGTTCGAGCA CCCAGGTCTG AAGGACCTCC TCGCCCGCGG CGCTGCCGAG
GGCCGCGTCG ATGCCGAGTC GTTCCGCGCT GCCTGCGAGG GCGCCGGTGT CGGCGACGCC
AAGCGCCTCA AGGCAGTCCT CAAGGCGCTG TCTCTCGCGG GGATCGAGGT CGGAATGCCG
ACGGTGGCAA AGGTCGCCGC CGCGACGTCG ACCCGCTCCA CGCGCACGAC GGCGAAGGCA
CCGGCGACCC GCAAGACGGC CACGAAGGCC GCCACGGCCT CCGGGGACGC CGACGACGCC
GCTGAGGCGA CCGAGGCACC CGCCGCGAAG GCCGCGGCCA AGGCGCCCGC CAAGAAGGCT
GCCCCCGCAC GCAAGAGCGC CGCGAAGGCG CCCGCCAAGA AGACCGCCGC GTCGGCGAAG
TCCGCGAAGG GCGGCGACGA CGCCGTCGAG GACGACGTCG AGATCGACGA GACCGAGCTC
GTGGCGGTCG ACGCCGACGT GACGGACACG GACGACGCTG CCGAGACCAC CACGGACGAC
GCCGGTGAGG CGAAGCCTGC GGAGAAGGAG GGCGAGAAGG AGGAAGACGC CGGCTTCGTC
GTCTCCGACT CCGACGACGA GGACCAGCCC GTCCAGCAGG TCGTCACGGC CGGTGCGACG
GCCGACCCGG TCAAGGACTA CCTCAAGCAG ATCGGCAAGG TCGCGCTGCT GAACGCCGAG
CAGGAGGTCG AGCTCGCGAA GCGCATCGAG GCCGGCCTGT TCGCGGAGGA GAAGCTCTCC
AAGGACTTCG CCGACTTCGA CCGGACCAAG GCGGACGCTG ACACGCGCCG GCTGGTGCGT
GACCTGCAGT GGATCGCCCA CGACGGCAAG CGCGCCAAGA ACCACCTGCT CGAGGCCAAC
CTGCGCCTGG TCGTCTCGCT CGCCAAGCGC TACACCGGCC GCGGCATGCT GTTCCTGGAC
CTGATCCAGG AGGGAAACCT CGGTCTGATC CGCGCGGTCG AGAAGTTCGA CTACACCAAG
GGCTACAAGT TCTCGACGTA CGCCACCTGG TGGATCCGTC AGGCGATCAC CCGCGCCATG
GCAGATCAGG CGCGCACCAT CCGCATCCCG GTGCACATGG TCGAGGTCAT CAACAAGCTG
GCCCGCGTGC AGCGCCAGAT GCTCCAGGAC CTGGGCCGCG AGCCCACCCC GGAGGAGCTG
GCCAAGGAGC TGGACATGAC CCCCGAGAAG GTGGTCGAGG TCCAGAAGTA CGGCCGCGAG
CCCATCTCGC TGCACACGCC GCTGGGCGAG GACGGCGACT CGGAGTTCGG TGACCTCATC
GAGGACTCCG AGGCCGTGGT CCCGGCCGAC GCCGTGTCCT TCACGCTGCT CCAGGAGCAG
CTCCACCAGG TGCTCGACAC GCTCTCCGAG CGTGAGGCCG GCGTGGTCTC GATGCGCTTC
GGCCTGCAGG ACGGCCAGCC CAAGACGCTC GACGAGATCG GCAAGGTCTA CGGCGTGACG
CGCGAGCGCA TCCGCCAGAT CGAGTCCAAG ACGATGTCGA AGCTGCGCCA CCCGTCGCGC
TCGCAGGTGC TGCGGGACTA CCTCGACTGA
|
|---|
| Protein sequence | MPKGRFVAST SLSTAQQNIT LPREFEHPGL KDLLARGAAE GRVDAESFRA ACEGAGVGDA
KRLKAVLKAL SLAGIEVGMP TVAKVAAATS TRSTRTTAKA PATRKTATKA ATASGDADDA
AEATEAPAAK AAAKAPAKKA APARKSAAKA PAKKTAASAK SAKGGDDAVE DDVEIDETEL
VAVDADVTDT DDAAETTTDD AGEAKPAEKE GEKEEDAGFV VSDSDDEDQP VQQVVTAGAT
ADPVKDYLKQ IGKVALLNAE QEVELAKRIE AGLFAEEKLS KDFADFDRTK ADADTRRLVR
DLQWIAHDGK RAKNHLLEAN LRLVVSLAKR YTGRGMLFLD LIQEGNLGLI RAVEKFDYTK
GYKFSTYATW WIRQAITRAM ADQARTIRIP VHMVEVINKL ARVQRQMLQD LGREPTPEEL
AKELDMTPEK VVEVQKYGRE PISLHTPLGE DGDSEFGDLI EDSEAVVPAD AVSFTLLQEQ
LHQVLDTLSE REAGVVSMRF GLQDGQPKTL DEIGKVYGVT RERIRQIESK TMSKLRHPSR
SQVLRDYLD
|
|---|
| |