Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xcel_1575 |
Symbol | |
ID | 8649099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylanimonas cellulosilytica DSM 15894 |
Kingdom | Bacteria |
Replicon accession | NC_013530 |
Strand | - |
Start bp | 1713762 |
End bp | 1715540 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | |
Product | Type IV secretory pathway VirD4 protein-like protein |
Protein accession | YP_003326163 |
Protein GI | 269956374 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.016741 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACAACC CGACCACTGC ACGCGCAGGG AACGACACGC TGACGAACGT CGCCCTCGGG GCGCTCGTCG CTGGCCTCGC CCTCGCCGGA CTGCTCCGGG CCGCGGCGAT CCTGGCGGCC CACCTGACGG GGCGGCCGTC CCCGGAAGGG AACGTTGTCG CAGGCTTCCG CGTCCTCGCG AACCCGTCGG GCCCCGCCGT CGTCTTCGAA CCGCCCGGCC TGACCGCCGT CGCCTACTGG TCCGTTCTCG CCGTCCTGGT GCTCGCCTCC TGGGGCATCG CCGTCGTCGG GTGGCGGGTG TTCCGGCCGG GGGCGGTCCG GTCGGACGGG TTCGCTACCC GGGCCGACGT CGCCAAGCAC GCCTCCGCGC GAGCCCTGCG GAAGCGATCC AAGTACCTGC GGCCGTCCCT CGGCCGACGC CGTCGACCGG AGGACGTCGG CTACCTCCTC GGCCGCTATC AGGGCCGAGA GCTGTGGGCC TCGGTCGAGG ACTCGTTCCT CGTCATCGGC CCACCGCGCA TGGGCAAGGG CGAGCACATC GTCATCAACG CGATCCTCGA CGCACCCGGC GCCGTCGTGA CCACGTCGAC CCGACCCGAC ACCCTCGCCG TCACCCTCAG AGCGCGCGAA CGCCGGGGAC CGGTCGCCGT CTTCGACCCG CAACGCCTCG CCCCCGGCCT GACCACCGGC CTGCGCTGGT CCCCGATCCG CGGCTGCGAG GACGAAGAGG TGGCGTCGCT GCGGGCTCGC GGTCTCGCGT CGACGACCGG GTTCGGTGGG CACGACACCG ACAACAGCGG CTACTGGCAG GGCCTGACCC GCAATGTCCT CGAGTGCCTC CTGCACGCCG CAGCGCTCGG CGCCCGCTCC CCCGCCGACC TCTACCTGTG GTCCAAGACC CCGGCCGCCG CGCAGGAAGC GGTCGCGATC CTGGCGGCCC ACCCCGACGC GGCACCGCGC TGGGCCGAGA CCCTCAACGC GCAGGTCAAC GCCGACCCCC GCACCCGCGA CTCCGTGTGG GGAGGCGTCT CCCTCGCCCT CGGATCGCTC AACACCCGCA CCGTCATGGA CGCCGTCAGC CCCGGACCCG GCGAACACTT CGACCCCGAA GCATTCCTGC GTGCAGGCGG CACCCTCTAC CTACTCGCGA CCAGCGCGGG CTCGGGCGGC GTCGCACCCC TGGTCGGGGC GTTCATCGAG GACATCACCG AGACCGCCAA GCGCCTCGCG GCCCGCTCCC CGATGCAGCG CCTCGACCCG CCGCTGCTCC TCGCGCTCGA CGAGATCGGC AACCTCGCAC CCCTGCCCAC CCTCCCGGCG TTGATGTCCG ACGGCGGCGG CTCGAACATC ACCGTCATGC CCGTCCTCCA GTCCTGGGCA CAAGCCCGCA ACGCCTGGGG CACCGAGAAA GCAGGAGCCA TCTGGGAAGC CGCCATCGTC AAGATCAACC TCGGCGGCTC CGCCGTCGCC CGCGATCTCC AAGACGTCTC CGCCCTCCTC GGCGAACGAG ACGACACCAC CTACTCCACG TCGATCGGAG CCGACGGCTC CAAGTCCACC TCAGCGTCTG TCCGACGGGT ACCCGTCATG TCACCGCAGC AACTGCGCGC CATACCCCGG GGCAAGGCCC TCATCCTGCT GCGCTCAGTC GCGCCGATGA TCGCCGACCT GCGTCCGTGG CGGTCTCGGA AGGACCGCAA GCAGCTCCTC GCGGACCAGC AGGACGTCGA GGCCAGGCTC GCGCGCGGCG CGGTCGTCGA CCGAGTGGTG TCCCCGTGA
|
Protein sequence | MNNPTTARAG NDTLTNVALG ALVAGLALAG LLRAAAILAA HLTGRPSPEG NVVAGFRVLA NPSGPAVVFE PPGLTAVAYW SVLAVLVLAS WGIAVVGWRV FRPGAVRSDG FATRADVAKH ASARALRKRS KYLRPSLGRR RRPEDVGYLL GRYQGRELWA SVEDSFLVIG PPRMGKGEHI VINAILDAPG AVVTTSTRPD TLAVTLRARE RRGPVAVFDP QRLAPGLTTG LRWSPIRGCE DEEVASLRAR GLASTTGFGG HDTDNSGYWQ GLTRNVLECL LHAAALGARS PADLYLWSKT PAAAQEAVAI LAAHPDAAPR WAETLNAQVN ADPRTRDSVW GGVSLALGSL NTRTVMDAVS PGPGEHFDPE AFLRAGGTLY LLATSAGSGG VAPLVGAFIE DITETAKRLA ARSPMQRLDP PLLLALDEIG NLAPLPTLPA LMSDGGGSNI TVMPVLQSWA QARNAWGTEK AGAIWEAAIV KINLGGSAVA RDLQDVSALL GERDDTTYST SIGADGSKST SASVRRVPVM SPQQLRAIPR GKALILLRSV APMIADLRPW RSRKDRKQLL ADQQDVEARL ARGAVVDRVV SP
|
| |