| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_34730 |
|---|
| Symbol | |
|---|
| ID | 8635106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 3881467 |
|---|
| End bp | 3882045 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003316195 |
|---|
| Protein GI | 269796740 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.169686 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGGCA TGACCACCGA CGACCTCCGC GAGAGCATCA TCGACGCCGC TGACAGGCTC
TACTACGCCA AGGGGTACGC GGCCGTCGGC ATGGACGAGC TCCGCACCGA GGCCGGCGTC
TCGCTGCGGC GCCTCTACAC GGTCTTCGCG TCCAAGGACG ACATCGTCCT GGCGGTCCTC
GACCGGCGCC ACCAGACCTG GGAGAGCGGC CTCGCCGAGA GCGTCGCCCG GGCAGCCGAC
CCGCGAGACA GGCTCCTGGC CATCTACGAC TACCTCGCCG ACTGGTTCTG CGACGACGAG
TTCCGCGGCT GCGGGTTCAT CAACGCCTTC GGCGAGCTCG GCGGCACGCG CCCCGCCGTC
GCCGAGGCCG CCCGCGAGCA CAAGGCCTCC TTCCAGCGCT ACGTCGCCGG CCTCGTGGCC
GACGCCGGCG CACCGCCCGC CCTCGCAGCC CAGCTCGCGA TCCTCGCCGA GGGCGCGCAG
ACCACCGCGG CGATCTCCGG CGACGCCTCT GTCGCCGCGC AGGCACGCGG GGCCGCCGAG
GTGCTCGTCG CCGCGGCCGG CGTGGCGGTC CCAGCCTGA
|
|---|
| Protein sequence | MDGMTTDDLR ESIIDAADRL YYAKGYAAVG MDELRTEAGV SLRRLYTVFA SKDDIVLAVL
DRRHQTWESG LAESVARAAD PRDRLLAIYD YLADWFCDDE FRGCGFINAF GELGGTRPAV
AEAAREHKAS FQRYVAGLVA DAGAPPALAA QLAILAEGAQ TTAAISGDAS VAAQARGAAE
VLVAAAGVAV PA
|
|---|
| |