| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_34550 |
|---|
| Symbol | |
|---|
| ID | 8635088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 3862664 |
|---|
| End bp | 3863311 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003316177 |
|---|
| Protein GI | 269796722 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00167706 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.63182 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGAA CCCCCACGGA CACACCACCG AGACGCCGCG TCCGCCTCTC CCGCGAGACG
CGGATCGCGC AGATCCTCGA GGAGTCCACG CGCCTGGTCA GCCAGCACGG CTTCTACGGG
TTCTCGCTCC AGGACGTCGC GACGGCTGTC GGCATCAGCC AGGCCGGCCT GCTGCACTAC
GTGGGGAGCA AGGAGGGCCT GCTCCAGCTC ATCGTCGAGC AGCGCTACGA CCGCCGCTTC
GACCCCGAGG CGTACGTGGC GAGCGGCGAC CCAGCCGCGA CCCACCCTGA CGGAGCCTCG
TTCCCCGGCT ACTGCCGGTT CCTCGTGCGC AACAACGCCG CCGAGCCCCA GCTCGTCCGC
CTGTACATGG TGCTCGGCGC CGAGGCGATC TCCCCCGAGC ACCCCGCGCA CGAGTACTTC
GACGCGCGCC CCGACGGCAC CTGGGAGCTG TACTCCCGGA CCCGCTGGCG GCTCCCGCCC
GAGGTCGGCA CCTGGGACGA CGCACGCGAC CTCGTCGAGA TGGCCATCGA GGCCATGGAC
GGCGTGCAGC TGCGGTCGTT CCGGTCCCCC GCCGTGTGCA TGGTCGACGG CTGGGCCCGC
TTCGAGCAGG TCCTGTTCCC GTCACCGGTC TGGGACGACT ACCGCTGA
|
|---|
| Protein sequence | MTGTPTDTPP RRRVRLSRET RIAQILEEST RLVSQHGFYG FSLQDVATAV GISQAGLLHY
VGSKEGLLQL IVEQRYDRRF DPEAYVASGD PAATHPDGAS FPGYCRFLVR NNAAEPQLVR
LYMVLGAEAI SPEHPAHEYF DARPDGTWEL YSRTRWRLPP EVGTWDDARD LVEMAIEAMD
GVQLRSFRSP AVCMVDGWAR FEQVLFPSPV WDDYR
|
|---|
| |