| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_34340 |
|---|
| Symbol | |
|---|
| ID | 8635067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 3838300 |
|---|
| End bp | 3839988 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | ABC-type dipeptide transport system, periplasmic component |
|---|
| Protein accession | YP_003316158 |
|---|
| Protein GI | 269796703 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.144528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.124622 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCATCGA CCACCTCGCC CCAGCAGGCA GCGTCACCTC GTCCTGCAGC ACCCGCTCGT
CGGACCACCT CACCCCACCG GGCAGCCTTC GCCGCCGCCA CGGTCTCCGC GCTGCTGCTC
GCCGGCTGCG CCTCCTCCGG CAACGCCGCC CCAGGTACCG ACGGTGCTGC CGCGACCGGC
GAGCCGCAGT CCGGCGGCAC GCTGCGCTTC GGGCTCGGGT ACGACCCCAC CTGCCTCGAC
CCGCAGCAGG CGGGCGGCAA CGACTCCCTC AACGTCGGCC GCCAGCTCGT CGACTCCCTC
ACCGACCAGG ACCCCGAGAC CGGCGAGATC GTGCCGTGGA TCGCGACGTC GTGGGAGGTG
TCCCCGGACG CCACCACCTT CACCTTCACG CTGCGCGACG ACGCGACCTT CGCCGACGGC
ACCCCCGTCG ACGCGGCCGC CGTCCAGGCC AACCTCGACG GCATCGCCGA GCTCGGCGCG
CAGTCGACGC TGGGGTCCAG CTACCTCGAC GGCTACGTGC AGACCGTGGT CGTCGACCCG
CAGACGGCGC GCGTCGAGTT CTCCCAGCCG AGCGCGCAGT TCCTCCAGGC GACGTCGACC
ATGACGCTCG GCCTGTTCTC GGTCGCGAGC ACCACGCTGT CCGTCGAAGA CCGCTGCGCC
GGGGAGTTCG TCGGCTCCGG GCCGTTCACG CTCACCGACT GGCAGCCTGC CCGCTCCGCG
TCGCTCGAGC GCCGCGAGGG CTACGCCTGG CCGTCGAGCA TCGCCGGGCA CGAGGGCGAG
GCCTACCTCG ACGGCATCGA GTACTCCGTG GTCTCCGAGC CGAGCGTGCG CACCGGCTCG
CTCCAGTCGG GCCAGCTCGA CGCGTTCATG AACGTGCTGC CCACGGACGA GGAGCCGCTG
AAGGCCAGCG GTCAGACCGT GTCCGCCCGG ACCAACCCCG GCATCTCGTT CTCCCTGGTG
CCCAACACCG ACCGACCCGT CGGCGGCGAC GAGGAGGTCC GGCTCGCGAT CAGCGCGGCC
ATCAACCGGC AGGAGGTCGT CGACACCGTC CTCACCCCGA GCTACAAGCC CGCGACCAGC
CCGCTGAGCA GCTCGAACCC CGGCTACACC GACCTCGGCG ACCTGCTCGC CTTCGACCTC
GACGCCGCCA CGGAGCGCCT CGACGCCGAG GGCTGGGAGC CCGGCGACGA CGGGATCCGC
ACCAAGGACG GCCAGCGTCT CCAGGCCGAC GTCGTCTACC TCACCAACTT CGCCGCGAGC
GAGCAGATCC TCCAGCTCGT CCAGCAGCAG CTGGTCAAGG CCGGCATCGA CCTCCAGCTG
CGCCAGGTGA CCATGGCCGA GTACCCCGAG GTGCAGAAGG TCGGCGACTA CGACTTCAGC
TGGAACTCCC TCACCCGCGC CGACGGCGAC GTGCTCCGCA CCATCTACGG CTCGAGCGGC
CGCAACGTGG CCCGCCTCGC CGAGGACGAC CCCGTCAACA CCCCGCTCGA CGCCCAGGCC
GCCGAGGGAG ACGACGCCGC ACGCCTCGCC CTCCTCGCCG ACGCCCAGAC GCAGCTGCTC
GAGCGCGGGC TGTCCATCCC GGTCATGGAG TTCACCACCG TCATCGCGAC GGCCCCGACG
GTCCACGACC TGAAGTTCGA GGCGTCGTCG CGGCTGTCCT TCTACGACAC CTGGATCGAG
GCACCGTGA
|
|---|
| Protein sequence | MPSTTSPQQA ASPRPAAPAR RTTSPHRAAF AAATVSALLL AGCASSGNAA PGTDGAAATG
EPQSGGTLRF GLGYDPTCLD PQQAGGNDSL NVGRQLVDSL TDQDPETGEI VPWIATSWEV
SPDATTFTFT LRDDATFADG TPVDAAAVQA NLDGIAELGA QSTLGSSYLD GYVQTVVVDP
QTARVEFSQP SAQFLQATST MTLGLFSVAS TTLSVEDRCA GEFVGSGPFT LTDWQPARSA
SLERREGYAW PSSIAGHEGE AYLDGIEYSV VSEPSVRTGS LQSGQLDAFM NVLPTDEEPL
KASGQTVSAR TNPGISFSLV PNTDRPVGGD EEVRLAISAA INRQEVVDTV LTPSYKPATS
PLSSSNPGYT DLGDLLAFDL DAATERLDAE GWEPGDDGIR TKDGQRLQAD VVYLTNFAAS
EQILQLVQQQ LVKAGIDLQL RQVTMAEYPE VQKVGDYDFS WNSLTRADGD VLRTIYGSSG
RNVARLAEDD PVNTPLDAQA AEGDDAARLA LLADAQTQLL ERGLSIPVME FTTVIATAPT
VHDLKFEASS RLSFYDTWIE AP
|
|---|
| |