Gene Sked_30960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_30960 
Symbol 
ID8634729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp3444334 
End bp3445956 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content71% 
IMG OID 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_003315827 
Protein GI269796372 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCGC CCTCGCCCGC CCACCCGTCT GCCCCGAGCC CGGCGCCTCG CCGTCGTCGT 
CTCGCCGACC TGCCGGTCGC CGTCCGCATC GGGCTCGGCT TCGGGATCGT GATCCTGCTG
ACCGCGATGA TCACCACGGT CGGCGCGCAG CGGATCCTCA CCCTCGACCA GCAGACGCAG
ACCCTCAACC GCGAGGCCAT CGCCCCGCAG GCCGACCTCA ACAGCGTCCA GCGCTGGTTC
CAGGCGAGCC GCGCCCGGGT GCTCGAGTAC GGCATGAGCA CCCCCGAGGA CCAGGTGACG
GTCCTCCAGG AGATGGAGGG CTTCGACACC GACGCCCTCG CGAGCATGGC GGCCTACGAG
CCCTACGTCC TCGACGACGC GGCCTTCGCG GCGCTGACCG ACGCCTACAG CCGCTACCAG
GCGGCCTTCC AGGTCATCGC GCCGTTCGCC GAGGACGGGG CGATCGAGTA CCACGACGCC
TACCTCGAGC AGGTACGACC GATCACCTCC GAGGTGACCA CCGCCCTCCA GGAGATCATC
GACGCGGTCG ACGAGAGCGC CGCGCAGTCG GTCGCCGAGT CCACCTCGAC CGCCCGTACC
GCGATCGTCT CGATGATCGT CGCCGGCATC GTCGCAGCGC TGCTCGCCGC CCTCGTCGCG
GTCACCCTCG TCCGCTCGAT CGTCGGCAAC CTGCGCAAGG TGCAGTCCAC CATCGTCGCG
CTCGGCGACG GCGACCTCAC GCACCCCACC GGTGTCGACT CGCGCGACGA GCTCGGGCAG
ATGGCCGGGT CGCTGACCAC CGCCCAGACC AACCTGCGCG AGCTCGTGTC GGGCGTCGTC
GCGACGGCCG GGACCGTCGC GGCGGCCGCC GAGGAGATGT CGGCCTCGAC CACCCAGGTC
GCCGCCGGCT CGGAGGAGAC CAGCGTCCAG GCGGGCGTGG TCGCGGCAGC CGCCGAGCAG
GTGTCCCGCA ACGTCCAGAC GGTCGCGGCG GGCGCCGAGC AGATGGGCGC GTCGATCCGG
GAGATCTCGC AGAACGCCAA CGAGGCCGCC CGCGCGTCGA ACGAGGCGGT CGAGCAGTCC
GAGCGCACCC GCGCGACGGT CGTCGAGCTC GGCACCTCGA GCCAGGAGAT CGGCGCGGTC
GTCAAGGTCA TCACGAGCAT CGCGGAGCAG ACCAACCTGC TCGCCCTCAA CGCGACCATC
GAGGCTGCCC GTGCCGGCGA GGCCGGCAAG GGCTTCGCGG TGGTGGCCTC CGAGGTCAAG
GACCTCGCAG CCGAGTCCGC CCGCGCCGCG GAGGACATCG CGCGACGGAT CGACGTGAAC
CGCACCCAGA CGGAGTCCGC GGTCGCGGCG ATCTCCGGCA TCGGCGAGAT CATCGCCACC
ATCAACGACT ACCAGCTGAC CATCGCGTCG GCGGTCGAGG AGCAGACGGC CACGACCACC
GAGATGTCGC GCTCGGTCAC CGAGGCGGCC ACCGGGTCGG GTGAGATCGC GCAGAACATC
GTCGGGGTCG CGACTGCCGC CGGGACGGCG TCCGACGTCG TCGCCCAGAT GGGCACGGCG
GTCCAGGAGC TCGCCATGAT GTCGTCTGAC CTGCGCGAAC GGGTCGCGCG CTTCGTCTAC
TGA
 
Protein sequence
MSAPSPAHPS APSPAPRRRR LADLPVAVRI GLGFGIVILL TAMITTVGAQ RILTLDQQTQ 
TLNREAIAPQ ADLNSVQRWF QASRARVLEY GMSTPEDQVT VLQEMEGFDT DALASMAAYE
PYVLDDAAFA ALTDAYSRYQ AAFQVIAPFA EDGAIEYHDA YLEQVRPITS EVTTALQEII
DAVDESAAQS VAESTSTART AIVSMIVAGI VAALLAALVA VTLVRSIVGN LRKVQSTIVA
LGDGDLTHPT GVDSRDELGQ MAGSLTTAQT NLRELVSGVV ATAGTVAAAA EEMSASTTQV
AAGSEETSVQ AGVVAAAAEQ VSRNVQTVAA GAEQMGASIR EISQNANEAA RASNEAVEQS
ERTRATVVEL GTSSQEIGAV VKVITSIAEQ TNLLALNATI EAARAGEAGK GFAVVASEVK
DLAAESARAA EDIARRIDVN RTQTESAVAA ISGIGEIIAT INDYQLTIAS AVEEQTATTT
EMSRSVTEAA TGSGEIAQNI VGVATAAGTA SDVVAQMGTA VQELAMMSSD LRERVARFVY