Gene Sked_23860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_23860 
Symbol 
ID8634021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp2654218 
End bp2655936 
Gene Length1719 bp 
Protein Length572 aa 
Translation table11 
GC content69% 
IMG OID 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003315134 
Protein GI269795679 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0809765 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTCCG CACCACCCTC CACCCCGTCC TCCGCAGCGG CCGACGCGCC GCTCGTGGTC 
CTGGACCAGC GCACCGTCTG GACGATCTTC GGCGCGCTGC TCGCCTCGAT GTTCATGTCC
TCGCTCGACC AGTCCATCCT CGGCACCGCG ATGCCGACGA TCGTCGGCGA GCTCAACGGC
GTCGAGCACC AGGGCTGGCT CATGACGGCC TACATCCTCG CCATCGCCAT CGTCATGCCG
CTCTACGGCA AGTTCGGCGA CATGTGGGGC CGACGCTGGC CCTTCATCAT CGCGATCGGC
CTCTTCACCG TCGCCTCCGC AGGAGCGGGC TTCGCGCAGA GCTTCGGCGA GCTGGTCGCC
TGGCGCGGCG TCCAGGGGCT CGGCGGAGGT GGCCTCATGA TCCTGTCGCA GGCGATCATC
GCCGACATCG TCCCCGCCCG GGAGCGCGGC AAGTACATGG GCCCCATGGG TGCCCTCTTC
GGCATCTCCG CCGTCATCGG CCCGCTGCTC GGCGGGCTCT TCACCGACCA CGCCAACTGG
CGCTGGTGCT TCTGGATCAA CATCCCGATC GGCCTCGCCG CGATGATCGT CGCCTGGCGG
ACCCTGCGGC TCCCGACCCA CCGCTCGGGC AAGAAGGTCG ACGTGCTCGG CATCCTCTTC
ATGGTGCTCG CCACGTCGAG CCTCGTGCTC GTCACGAGCT GGCAGAGCTG GAGCGGGCAG
AGCAGCTACG ACTGGTCGCA CGCCGGTCTG CTCGCGCTCG CCCTCACCTT CGCCGCGTCG
ACGGCGCTCT TCATCATCGT CGAGCACCGC GCCGAGGAGC CCCTCATCCC GCTGCACCTC
TTCAAGAACC CGACCTTCAC CATCTCCACG AGCGTCGGCC TGGTCATCGG CATGGGCATG
TTCGCCGCCC TGAGCTTCCT GCCGACCTTC CTCCAGATGT CCGCAGGCGT GGGCGTCACG
GCCTCCGGGT TCCTCATGCT GCCGATGATG GCCGGGCTGA TGCTCACCGC CATCACCTCC
GGAGTCCTCA TCACCAAGAC CGGCCGGTAC AAGAAGTACC CGGTGGCCGG CATGGCGATC
GCCACGATCG GGCTCGTCTC GCTCACCCAG ATCTCCGGCG AGACCTCGAT GGTCGTCTTC
GGTCTCATGC TCTTCGTGCT CGGCGCCGGC CTCGGCCTCG TGATGCAGAC CATCGTGCTG
GCCGTGCAGA ACGCGGTCGA CCCGAAGGAG ATCGGTACCG CGACGAGCTC GAACAACTTC
TTCCGCGAGA TCGGCGCAGC CGTCGGCGTC GCCGTCTTCT CGACCATCTT CACGGGGCGC
CTCACGAGCA ACCTCACCGA GGTCGCCGGG TCCGTGCCGC CCGAGCAGGC CGCGCAGCTC
GACCCGACCG GCGTCACGCC CGAGGCTGTC GCCGCTCTGC CCGAACCCCT CAAGCAGGGG
GTCATCGACG CCTTCGCCGA CTCCCTCGCC CCGGCCTTCT GGTACCTCGT GCCGCTGCTG
GTGATCGGGT TCCTGCTCAC GCTGTTCCTC AAGGAGGTCA CGCTCTCGAC CGAGGCCGGC
ATGGTCGCCC GCGGCGAGGC CGTGGCCGGT GGAGGGGCGC CCGCTGCCGC GGCAGCCGCC
GACCGGGCCC CCGCGCTCTC CGAGAGCGAG ACCGTGGTGC TCGACACCGA CGCGCACCCG
GCCGACGACC CACAGGGCAC GCGACCGTCG GTATCCTGA
 
Protein sequence
MASAPPSTPS SAAADAPLVV LDQRTVWTIF GALLASMFMS SLDQSILGTA MPTIVGELNG 
VEHQGWLMTA YILAIAIVMP LYGKFGDMWG RRWPFIIAIG LFTVASAGAG FAQSFGELVA
WRGVQGLGGG GLMILSQAII ADIVPARERG KYMGPMGALF GISAVIGPLL GGLFTDHANW
RWCFWINIPI GLAAMIVAWR TLRLPTHRSG KKVDVLGILF MVLATSSLVL VTSWQSWSGQ
SSYDWSHAGL LALALTFAAS TALFIIVEHR AEEPLIPLHL FKNPTFTIST SVGLVIGMGM
FAALSFLPTF LQMSAGVGVT ASGFLMLPMM AGLMLTAITS GVLITKTGRY KKYPVAGMAI
ATIGLVSLTQ ISGETSMVVF GLMLFVLGAG LGLVMQTIVL AVQNAVDPKE IGTATSSNNF
FREIGAAVGV AVFSTIFTGR LTSNLTEVAG SVPPEQAAQL DPTGVTPEAV AALPEPLKQG
VIDAFADSLA PAFWYLVPLL VIGFLLTLFL KEVTLSTEAG MVARGEAVAG GGAPAAAAAA
DRAPALSESE TVVLDTDAHP ADDPQGTRPS VS