| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_23860 |
|---|
| Symbol | |
|---|
| ID | 8634021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 2654218 |
|---|
| End bp | 2655936 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_003315134 |
|---|
| Protein GI | 269795679 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0809765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCCG CACCACCCTC CACCCCGTCC TCCGCAGCGG CCGACGCGCC GCTCGTGGTC
CTGGACCAGC GCACCGTCTG GACGATCTTC GGCGCGCTGC TCGCCTCGAT GTTCATGTCC
TCGCTCGACC AGTCCATCCT CGGCACCGCG ATGCCGACGA TCGTCGGCGA GCTCAACGGC
GTCGAGCACC AGGGCTGGCT CATGACGGCC TACATCCTCG CCATCGCCAT CGTCATGCCG
CTCTACGGCA AGTTCGGCGA CATGTGGGGC CGACGCTGGC CCTTCATCAT CGCGATCGGC
CTCTTCACCG TCGCCTCCGC AGGAGCGGGC TTCGCGCAGA GCTTCGGCGA GCTGGTCGCC
TGGCGCGGCG TCCAGGGGCT CGGCGGAGGT GGCCTCATGA TCCTGTCGCA GGCGATCATC
GCCGACATCG TCCCCGCCCG GGAGCGCGGC AAGTACATGG GCCCCATGGG TGCCCTCTTC
GGCATCTCCG CCGTCATCGG CCCGCTGCTC GGCGGGCTCT TCACCGACCA CGCCAACTGG
CGCTGGTGCT TCTGGATCAA CATCCCGATC GGCCTCGCCG CGATGATCGT CGCCTGGCGG
ACCCTGCGGC TCCCGACCCA CCGCTCGGGC AAGAAGGTCG ACGTGCTCGG CATCCTCTTC
ATGGTGCTCG CCACGTCGAG CCTCGTGCTC GTCACGAGCT GGCAGAGCTG GAGCGGGCAG
AGCAGCTACG ACTGGTCGCA CGCCGGTCTG CTCGCGCTCG CCCTCACCTT CGCCGCGTCG
ACGGCGCTCT TCATCATCGT CGAGCACCGC GCCGAGGAGC CCCTCATCCC GCTGCACCTC
TTCAAGAACC CGACCTTCAC CATCTCCACG AGCGTCGGCC TGGTCATCGG CATGGGCATG
TTCGCCGCCC TGAGCTTCCT GCCGACCTTC CTCCAGATGT CCGCAGGCGT GGGCGTCACG
GCCTCCGGGT TCCTCATGCT GCCGATGATG GCCGGGCTGA TGCTCACCGC CATCACCTCC
GGAGTCCTCA TCACCAAGAC CGGCCGGTAC AAGAAGTACC CGGTGGCCGG CATGGCGATC
GCCACGATCG GGCTCGTCTC GCTCACCCAG ATCTCCGGCG AGACCTCGAT GGTCGTCTTC
GGTCTCATGC TCTTCGTGCT CGGCGCCGGC CTCGGCCTCG TGATGCAGAC CATCGTGCTG
GCCGTGCAGA ACGCGGTCGA CCCGAAGGAG ATCGGTACCG CGACGAGCTC GAACAACTTC
TTCCGCGAGA TCGGCGCAGC CGTCGGCGTC GCCGTCTTCT CGACCATCTT CACGGGGCGC
CTCACGAGCA ACCTCACCGA GGTCGCCGGG TCCGTGCCGC CCGAGCAGGC CGCGCAGCTC
GACCCGACCG GCGTCACGCC CGAGGCTGTC GCCGCTCTGC CCGAACCCCT CAAGCAGGGG
GTCATCGACG CCTTCGCCGA CTCCCTCGCC CCGGCCTTCT GGTACCTCGT GCCGCTGCTG
GTGATCGGGT TCCTGCTCAC GCTGTTCCTC AAGGAGGTCA CGCTCTCGAC CGAGGCCGGC
ATGGTCGCCC GCGGCGAGGC CGTGGCCGGT GGAGGGGCGC CCGCTGCCGC GGCAGCCGCC
GACCGGGCCC CCGCGCTCTC CGAGAGCGAG ACCGTGGTGC TCGACACCGA CGCGCACCCG
GCCGACGACC CACAGGGCAC GCGACCGTCG GTATCCTGA
|
|---|
| Protein sequence | MASAPPSTPS SAAADAPLVV LDQRTVWTIF GALLASMFMS SLDQSILGTA MPTIVGELNG
VEHQGWLMTA YILAIAIVMP LYGKFGDMWG RRWPFIIAIG LFTVASAGAG FAQSFGELVA
WRGVQGLGGG GLMILSQAII ADIVPARERG KYMGPMGALF GISAVIGPLL GGLFTDHANW
RWCFWINIPI GLAAMIVAWR TLRLPTHRSG KKVDVLGILF MVLATSSLVL VTSWQSWSGQ
SSYDWSHAGL LALALTFAAS TALFIIVEHR AEEPLIPLHL FKNPTFTIST SVGLVIGMGM
FAALSFLPTF LQMSAGVGVT ASGFLMLPMM AGLMLTAITS GVLITKTGRY KKYPVAGMAI
ATIGLVSLTQ ISGETSMVVF GLMLFVLGAG LGLVMQTIVL AVQNAVDPKE IGTATSSNNF
FREIGAAVGV AVFSTIFTGR LTSNLTEVAG SVPPEQAAQL DPTGVTPEAV AALPEPLKQG
VIDAFADSLA PAFWYLVPLL VIGFLLTLFL KEVTLSTEAG MVARGEAVAG GGAPAAAAAA
DRAPALSESE TVVLDTDAHP ADDPQGTRPS VS
|
|---|
| |