| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_23030 |
|---|
| Symbol | |
|---|
| ID | 8633938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 2561083 |
|---|
| End bp | 2561526 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | LysM domain-containing protein |
|---|
| Protein accession | YP_003315052 |
|---|
| Protein GI | 269795597 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.14716 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATT CCGCACTGGT GCTGACACCC GGGCGCGAGC TCCGCCTCGT CCGCGACGGA
GAGGTCCCTG CGTCCGGGCG CGCCTCGTCC GTGAGTGCCT CGGCGGCGGC CGGTCTGCCG
CGCGGCGCCT CGGCTCCTGC CGGCGGCTCC CTGCGCGACC TGCGTCTGAC GCGCCGCGGC
TGGTGGGTGC TCTCCCTCGT CGCGGTCCTG CTGGTGGTGG CGGGCATGGT CGTCGGTGAC
CGTGCGTTCG CCAGCGCTCC GGCGGAGGCG GTCAGCGTGA CCGAGCACTA CGTGGCGCAG
GGCGAGACGC TCTGGAAGAT CGCCCGCACC GTCGCGCTCC CTGGCGAGGA CACCCGGGAC
GTGGTGGAGA TGCTGGTCGA GCTCAACGGC CGGTCGAGCG CCTCGCTGCA GGTCGGCGAG
CAGCTGTTGC TCCCGGTGCG ATGA
|
|---|
| Protein sequence | MADSALVLTP GRELRLVRDG EVPASGRASS VSASAAAGLP RGASAPAGGS LRDLRLTRRG
WWVLSLVAVL LVVAGMVVGD RAFASAPAEA VSVTEHYVAQ GETLWKIART VALPGEDTRD
VVEMLVELNG RSSASLQVGE QLLLPVR
|
|---|
| |