| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_20900 |
|---|
| Symbol | |
|---|
| ID | 8633725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 2331785 |
|---|
| End bp | 2333530 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | ATP-dependent 26S proteasome regulatory subunit |
|---|
| Protein accession | YP_003314846 |
|---|
| Protein GI | 269795391 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACATCGT CGGACCTCAC GCAGCGGAAG GGGCTCACCA TGAGCGACTC GACACCCGAC
ACCCCCCGGA GCACGCCTGA GGACGCCGCC CGCCGGCTCG CCGTGCTCTC CGCGCAGAAC
GAGCGCCTCG CCCAGGTGCT CGGCGAGGCA CGCGGCAAGA TCGTCGAGCT GCAGCAGCAG
ATCGAGGAGT TCGCCAAGCC CCCGGGCACC TTCGCGGTGT TCCTCGCCGA GCACGGCGAC
GGCACGCTCG ACGTGATGTC GGCCGGCCGC AAGATGCACG TCGGCGCGAG CCCCTCCGTC
GACCTCACGC AGCTGCGACC CGGCCAGGAG GTCAGCCTCA ACGAGGCCTT CGTCGTGGTC
GCCGCGGGAG GGTTCGAGCC GGTCGGGGAG ATCGTCACCG TCAAGGAGCT CCTCGACGAC
GGCCGTGCCC TCGTGGTCGG CCGCTCGGAC GAGGAGCGCG TCGTGCGCCT GGCGGGGTCC
CTCGCCGGCG CGCCGCTGCG TGCGGGCGAC GCCCTCACCG TCGACACCCG GTCGGGCTTC
GTCTACGAGC GCATCCCCAA GGCCGAGGTC GAGGACCTGG TCCTCGAGGA GGTCCCGGAC
ATCGACTACG GCGACATCGG CGGCCTCGGA CCGCAGATCG AGCAGATCCG CGACGCGGTC
GAGCTGCCCT TCAACCACCC CGACCTGTTC CGCGAGCACG GGCTCCGCCC GCCCAAGGGG
ATCCTCCTCT ACGGCCCTCC CGGGTGCGGC AAGACGCTCA TCGCCAAGGC CGTCGCCAAC
TCGCTCGCGG CCGCCGTGGC CCGTCGGGCC GCAGCGGCGG CCGAGGCCGG CGGGACGGTC
GACGGCTCGC CGGTCCTGGT CGAGACGGCC AACCAGGCCA AGAGCTACTT CCTCAACGTC
AAGGGGCCCG AGCTGCTCAA CAAGTACGTG GGGGAGACGG AGCGCCACAT CCGGCTGATC
TTCTCCCGGG CCCGTGAGAA GGCGTCCCAG GGCTACCCCG TCGTCGTCTT CTTCGACGAG
ATGGAGTCGC TGTTCCGCAC CCGCGGGACC GGGCTGTCCT CGGACGTCGA GACCACGATC
GTGCCGCAGC TGCTCAGCGA GATCGACGGC GTCGAGCGAC TCGACAACGT CATCGTCATC
GGCGCGTCCA ACCGCGAGGA CATGATCGAC CCGGCCATCC TGCGCCCGGG GCGCCTCGAC
GTGAAGATCA AGATCGAGCG CCCGGACCCC GAGGGCGCCC GCGAGATCTT CGCGAAGTAC
CTCACCACCG ACCTCCCGAT CCACGCCGAC GACCTCGCCG AGCACCAGGG CGACACGGCC
GCCGTGGTCG ACGGCATGAT CCAGCGGGTC GTCGAGCGCA TGTACGCCGA CACCGAGGAG
AACCAGTTCC TCGAGGTGAC CTACGCCTCC GGGGACAAGG AGACGCTGTA CTTCAAGGAC
TTCAACTCCG GCGCCATGAT CCAGAACATC GTGGACCGGG CCAAGAAGTC GGCCATCAAG
GACTTCCTCG CCACGGGCCA GCGCGGCATC CGGGTGGAGC ACCTGGTGAC GGCCTGCGTC
GACGAGTTCA AGGAGAACGA GGACCTGCCG AACACGACCA ACCCGGACGA CTGGGCGCGC
ATCTCGGGGA AGAAGGGTGA GCGCATCGTC TTCATCCGCA CGATCGTCCA GGACAAGAAC
GGGTCGGGCC GGTCGGCGGC GGGCCGCACC ATCGAGACGG CGACCAGTAC GGGGCAGTAC
CTCTGA
|
|---|
| Protein sequence | MTSSDLTQRK GLTMSDSTPD TPRSTPEDAA RRLAVLSAQN ERLAQVLGEA RGKIVELQQQ
IEEFAKPPGT FAVFLAEHGD GTLDVMSAGR KMHVGASPSV DLTQLRPGQE VSLNEAFVVV
AAGGFEPVGE IVTVKELLDD GRALVVGRSD EERVVRLAGS LAGAPLRAGD ALTVDTRSGF
VYERIPKAEV EDLVLEEVPD IDYGDIGGLG PQIEQIRDAV ELPFNHPDLF REHGLRPPKG
ILLYGPPGCG KTLIAKAVAN SLAAAVARRA AAAAEAGGTV DGSPVLVETA NQAKSYFLNV
KGPELLNKYV GETERHIRLI FSRAREKASQ GYPVVVFFDE MESLFRTRGT GLSSDVETTI
VPQLLSEIDG VERLDNVIVI GASNREDMID PAILRPGRLD VKIKIERPDP EGAREIFAKY
LTTDLPIHAD DLAEHQGDTA AVVDGMIQRV VERMYADTEE NQFLEVTYAS GDKETLYFKD
FNSGAMIQNI VDRAKKSAIK DFLATGQRGI RVEHLVTACV DEFKENEDLP NTTNPDDWAR
ISGKKGERIV FIRTIVQDKN GSGRSAAGRT IETATSTGQY L
|
|---|
| |