| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_18990 |
|---|
| Symbol | |
|---|
| ID | 8633534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 2108053 |
|---|
| End bp | 2110572 |
|---|
| Gene Length | 2520 bp |
|---|
| Protein Length | 839 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | YP_003314658 |
|---|
| Protein GI | 269795203 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.127417 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGCCG ACCCGATCGC CCGACTCCTC GCCGACCCAC CCGACCTCCC CGTCCGCAGC
GCCCTCCCGG CGCTCGCCGA CGCCGTCCGC GACCGCGGGG TCGTCGTGGT CCAGGCACCA
CCCGGGACCG GCAAGACCAC GCTCGTGCCA CCGGCGCTCG CGGACCTGCT CGGCGCAGGC
CGCGTGGTCG TCACGCAGCC CCGGCGGGTC GCCGCACGCG CAGCAGCCCG CCGCCTCGCG
CAGCTCCTCG GCGAGCCGCT CGGCCAGACC GTCGGCTACT CGGTCCGGGG AGAGTCGACC
ACCAGCGCGA GCACCCGGGT GGAGGTGGTC ACCACCGGTG TGCTGCTGCG CCGCCTGCAG
CGCGACCCGG GCCTCGACGG CGTCACCGCC GTGGTGCTCG ACGAGTGCCA CGAGCGCCAG
CTCGACGCCG ACCTCGCCCT CGCGCTCCTC GTCGACGTGC GCGCCAACCT CCGCGACGAC
CTCGTGCTCG TCGCCATGTC CGCGACCGTC GAGGCAGAGC GCACCGCGGC TGTCGTCGGC
GGCGACGGGC CTGCCGCCCC GGTCGTCACG GTGCCGGGCG CGCTGCACCC CGTGACGCAG
GTCTGGGCTC CGCCGCCAGC CCGCGTCACC GCCCTCGACG AGCGGGGTGT CACGCCCGCG
TTCCTCGACC ACGTGGTCGC CACCACCCGG CGCGCCCTCG ACGAGCGGCC GGGGGACGTG
CTCGTGTTCG TGCCAGGGGC ACGCGAGGTC GACGTCGTCG CCCGAGGCCT TGCCGGGGTC
GAGGCCGACG TGCGGCCGCT GCACGGCCGG CTCCCCGCCG CGCAGCAGGA CCTCGCCCTG
AGCGCGGGGC CTCGTCGGCG CGTGGTGGTC TCGACCGTGG TGGCCGAGTC GTCGCTCACC
GTCCCCGGGG TCCGCACGGT CGTGGACGCG GGCCTGTCCC GCGAGCCGCG GGTCGACCAC
CGCCGGGGGC TGTCCGGGCT GGTGACCGTC CGGGGCAGCC GGGCCTCGGC CGAGCAGCGT
GCGGGGCGTG CCGGACGTGA AGGGCCGGGA GCGGTGTACC GCTGCTGGAG CGAGGCCGAC
CACGTCCGGC TCGTCGCGCA CCCGGTCCCG GAGATCCTCA CCGCCGACCT CACGTCCTTC
GCGCTCGAGC TCTCCTGCTG GGGCTCGCCC GACGGCACGG CGCTCGCGCT CATGGACGCC
CCGCCCGCCG CGGCGAGCGC CGTGGCCCGC CAGACGCTCG TCAGCCTCGG CGCGGTCGAG
GCCGACGGGA CCGTCACGGC CCGAGGACGG CAGATCGCCG GGGTCCCGGT CGACCCGCGC
CTGGCCCGCG CCCTCCTCGA CGGAGCCGAC GCCGTCGGCC CGCGCGCCGC GGCCGAGGTG
GTCGCGTTGC TCTCCGAGGA CGTCCGCGCC CCGGGCGGCG ACCTCGTCGC GGCCGTCCGC
GGGCTGCGCG CCGGGACCCT CCCGGCGCCG ACGTGGAAGA GCCAGGTGAC CCGTCTCGAG
GCGCTCGCAC GGCGCAGCGG ACCAGCGCGG GGGCTTGCCA CCCGCGGCAG CGCCGGAGGC
CGGCGGGCCG GGCTCAGCCT CGACCTGACG GTCGGGCTCG TCGTCGCCCT CGCGCACCCG
GACCGGGTCG CCCGACGGCG CCCCAAGGGC TCGACCTACC TCATGGTGTC CGGCACCGGA
GCCGCGCTCG CCCCGGGCTC TTCGCTCACC GGCTACGACT GGGTCGCGGT GGCCGACGCC
GACCGTGGAG CAGGGCGCCG CGACGCGACG GTCCGCTCGG CCGCCCCGCT CGACGAGGAC
CTCGCCCTCG ACGCCGCGTC CTCCGCACTG CACGACGACG CCACGGTCAC CTGGACCGAT
GGCCGCGTCG TCGCGCGCCG CACCACGTCG CTCGGCGCCA TCGAGCTGAC CTCCGACCGG
CTCACCGACC CGCCCCGCGA CCAGGTGGTC GCCGCCGTCC GCGACGGGCT GGCCCGCGAC
GGCCTCGACG CGCTGCCCTG GCGCGAGTCC GCCGTCGCGC TGCGCGCCCG GCTGGACTTC
CTGCACCGAG CCCTCGGCGA ACCCTGGCCC GACGTGAGCG ACCAGGCGCT GCTCGACGGC
CTCGACCGGT GGCTGGGCCC CGACCTCGAC CGGGTGCGCC GCGCCGACGA CCTCCGGCGG
CTCGACGTCA CCTCGGCGCT GCGACGGCTC CTGCCCTGGC CCGAGGCCGG ACGGCTCGAC
GAGCTCGCGC CCGAGCGCGT CACCGCACCG TCCGGCACAG GCGTCCGGGT CGACTACTCC
GGCGACCAGC CCGTCGCCGC GCTCAAGGTG CAGGAGGCCT TCGGGTGGAA GGAGGCACCC
CGGCTCGCCG GCGGCAGGGT GCCCCTGCTG CTCCACCTGC TTTCACCGGC CCGACGCCCC
GCCGCGGTCA CCGCCGACCT CGCGTCCTTC TGGTCCACCG GGTACCCGCA GGTCAGGGCA
GAGCTCCGGC GCCGCTACCC CAAGCACGCC TGGCCCGAGG ACCCCTTCGC GGCGCGCTGA
|
|---|
| Protein sequence | MPADPIARLL ADPPDLPVRS ALPALADAVR DRGVVVVQAP PGTGKTTLVP PALADLLGAG
RVVVTQPRRV AARAAARRLA QLLGEPLGQT VGYSVRGEST TSASTRVEVV TTGVLLRRLQ
RDPGLDGVTA VVLDECHERQ LDADLALALL VDVRANLRDD LVLVAMSATV EAERTAAVVG
GDGPAAPVVT VPGALHPVTQ VWAPPPARVT ALDERGVTPA FLDHVVATTR RALDERPGDV
LVFVPGAREV DVVARGLAGV EADVRPLHGR LPAAQQDLAL SAGPRRRVVV STVVAESSLT
VPGVRTVVDA GLSREPRVDH RRGLSGLVTV RGSRASAEQR AGRAGREGPG AVYRCWSEAD
HVRLVAHPVP EILTADLTSF ALELSCWGSP DGTALALMDA PPAAASAVAR QTLVSLGAVE
ADGTVTARGR QIAGVPVDPR LARALLDGAD AVGPRAAAEV VALLSEDVRA PGGDLVAAVR
GLRAGTLPAP TWKSQVTRLE ALARRSGPAR GLATRGSAGG RRAGLSLDLT VGLVVALAHP
DRVARRRPKG STYLMVSGTG AALAPGSSLT GYDWVAVADA DRGAGRRDAT VRSAAPLDED
LALDAASSAL HDDATVTWTD GRVVARRTTS LGAIELTSDR LTDPPRDQVV AAVRDGLARD
GLDALPWRES AVALRARLDF LHRALGEPWP DVSDQALLDG LDRWLGPDLD RVRRADDLRR
LDVTSALRRL LPWPEAGRLD ELAPERVTAP SGTGVRVDYS GDQPVAALKV QEAFGWKEAP
RLAGGRVPLL LHLLSPARRP AAVTADLASF WSTGYPQVRA ELRRRYPKHA WPEDPFAAR
|
|---|
| |