| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_18500 |
|---|
| Symbol | |
|---|
| ID | 8633485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 2057741 |
|---|
| End bp | 2060659 |
|---|
| Gene Length | 2919 bp |
|---|
| Protein Length | 972 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | |
|---|
| Product | superfamily II RNA helicase |
|---|
| Protein accession | YP_003314610 |
|---|
| Protein GI | 269795155 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00038205 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0935996 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCTC CCTCCCGACG CCGCAGGTCG GCCCCGGCCA CCCCGGCCGC CGCCAGCACC
ACCCGCACCG GCCCGAGCCC CGCCGAGCGC TACCAGCAGT ACCGCCAGCG CGCCGAGCTC
GACTCCCAGC AGGTCTCCGC GTTCCGCCAG ACCCTCGACT TCGACCTCGA CGACTTCCAG
CTCGAGGCCT GCGCCGCGCT CGAGCGCGGG CACGGCGTGC TCGTGGCCGC CCCGACCGGA
GCAGGCAAGA CCATCGTCGG CGAGTTCGCC ATCCACCTCG CGGTGACCGG CGGGCGCAAG
GCGTTCTACA CCACGCCGAT CAAGGCCCTG AGCAACCAGA AGTACGCCGA CCTCGTCGCC
CGGTACGGCG CCGAGCACGT CGGGCTGCTC ACCGGCGACA CGACCATCAA CGGCGAGGCC
CCCGTCGTCG TCATGACCAC CGAGGTCCTG CGGAACATGC TCTACGCCGC GTCGCCCACC
CTCGACAACC TCGGCTTCGT GGTCATGGAC GAGGTCCACT ACCTCGCCGA CAGGTTCCGC
GGCTCCGTCT GGGAAGAGGT CATCATCCAC CTCGCCGCCG ACGTGCAGCT CGTGTCGCTG
TCCGCGACGG TCTCCAACGC CGAGGAGTTC GGCGACTGGC TCGAGATGGT CCGCGGCGAC
ACGACCGTCG TCGTCAGCGA GCACCGACCC GTGCCGCTCA CCCAGCACGT GGCTGCCGCA
CGACGGGGGG CCGCTCCCGG CGGGCTCTTC GACCTCTACG CGCACACCGT CGACCCCACC
GCCCCGGGGC CCAACCCGCC CATCAACCCC GACCTGCTGG CCCTCATGCG CCAGGGCGAC
TCCTTCCGCG GCGGCGGGGG CCGCGGTCGC GGCTACCGCA GCGCCCGCGG CCAGGGCGGC
CCCGGCGGAC GCAGCCGGGA CAGCGCACGG GGCTCGGCCG GGACGACCGG CCGCCGCGGC
CCCGCACGGT TCACCGTCGT CGACGAGCTC GAGCAGGCCC GCCTGCTGCC CGCCATCTAC
TTCATCTTCT CCCGCGCCGG GTGCGAGGGA GCCGTCGCGC AGTGCGTCGG CTCGGGGCTG
CGGCTGACCA CCCCGGAGCA GGAGCTCACC ATCCGCGGGA TCGTCGAGGC GCGCTGCGCA
AACATCCCCT CCGAGGACCT CGCCGTCCTG GGCTACTGGG GCTGGCTCGA CGCCCTGACC
CGCGGCATCG CCGCGCACCA CGCCGGCATG CTCCCGCTGT TCAAGGAGAC CGTCGAGGAG
CTCTTCAGCG CCGGTCTCGT CAAGATCGTC TTCGCGACCG AGACCCTGGC CCTCGGCATC
AACATGCCCG CGCGCTCCGT CGTCCTCGAG AAGCTCGTCA AGTGGGACGG CTCGTCGCAC
GTCGACCTCA CGCCGGGGGA GTACACCCAG CTCACCGGGC GCGCCGGACG TCGCGGCATC
GACGTCGAGG GGCACGCCGT GGTCGTCGAC CACCCCGGCC TCGACCCGGT GGTCCTCGCC
GGCCTCGCCT CCAAGCGCCT CTACCCCCTG AAGTCCAGCT TCGCGCCCAC CTACAACATG
GCCGTCAACC TCGTGTCCCA GGTGGGCCGC GAGCGCGCCC GCGAGATCCT CGAGACGTCC
TTCGCGCAGT TCCAGGCAGA CCGCGGCGTG GTGGGCCTGG CCAAGCAGGC GGCGGCGAGC
TCGGAGGCGC TCGACGGCTA CGCCGAGGCG ATGCTCTGCG AGCAGGGCGA CTTCCGCGAG
TACATGCGGC TGCGCAAGGC GCTGTCGGCG CGCGAGGCCG AGCTGTCGAA GCGTGCGACG
AACGAGCGCC GCAGCGAGGT CGTGCGGGCG CTCGAGTCGC TGCGCCGTGG TGACCTCGTC
GAGATCCCGT CGGGGCGCCG GGCCGGGTAC GCGCTCGTGC TCGACCCGGG GTCGGACGGC
GGCTTCGACG GGCCGCGCCC GACGATCCTC AGCACCGACC GCCAGGTGAA GAGGCTGACC
GTGGCCGACG TCCCGCAGGG GCTTCGGGTG GTGGGTGAGG TGCGGATCCC CAAGACCTTC
AACGCCCGCA ACCCCGGCTC ACGACGGGAC CTCGTGTCGT CGATGAACAC CAGGCTGGGC
GCGTTCGCGG ACACCGCTGA CGGGCGCGTG CCCAAGCGTT CCGGCTCGAC GCGTCGTGGC
GCGGGCGACG ACGCGGAGGT GGCGCGGATC CAGGCGGCCC TGCGGGCGCA CCCCTGCCAC
TCGTGCCCCG ACCGCGAGAC GCACGCGCGG TGGGCGCTGC GGTGGGAGTC CCTCGACAAG
GAGCACAAGG CGCTGATGCG TCGCATCGAG GGACGCACGG GGTCGATCGC GAAGGTGTTC
GACCGCATCT GCGACGTGCT GCGGACGCTG GAGTACCTCG AGCGGGACGA GCACGGCGCG
CTCGTGGTGA CCCGTGCGGG GGAGAGCCTC AAGCGGCTGT ACGCGGAGAG CGACCTGCTG
CTGGCCGAGT GCCTGCGTCG CGGGGTCTGG GACGACCTCG ACCCCGCGGG CCTGGCGGCG
GCGGTGTCGA CAGTCGTGTA CTCGGCGCGC CGGGACGACC GTGAGGAGGA GCCGCACGTG
CCGGGTGGTC CGGACGGGCG GCTGGCCCGC GCGCTCGACG AGACGGTGCG GATCTGGTCG
GCTCTCGACG ACCTCGAGGA CGCGCACCGG CTCGAGGCGA CGGGTCCGCT CGACATGGGG
CTGGTCGAGG CGATGCACCG CTGGGCGTCG GGGCGCAGCC TCGACGTGGT GCTCAAGGGC
ACCGACCTCG CTGCGGGAGA CTTCGTTCGG TGGTGCAAGC AGGTGATCGA CGTCCTCGGG
CAGCTCACCA AGGCCTCGCC GCAGGACCAC GTCCGGGTCA CCGCGGACAA GGCGATCGAC
GCGCTGCGCC GGGGCGTGGT GGCGTACTCG AGCGTGTAG
|
|---|
| Protein sequence | MAPPSRRRRS APATPAAAST TRTGPSPAER YQQYRQRAEL DSQQVSAFRQ TLDFDLDDFQ
LEACAALERG HGVLVAAPTG AGKTIVGEFA IHLAVTGGRK AFYTTPIKAL SNQKYADLVA
RYGAEHVGLL TGDTTINGEA PVVVMTTEVL RNMLYAASPT LDNLGFVVMD EVHYLADRFR
GSVWEEVIIH LAADVQLVSL SATVSNAEEF GDWLEMVRGD TTVVVSEHRP VPLTQHVAAA
RRGAAPGGLF DLYAHTVDPT APGPNPPINP DLLALMRQGD SFRGGGGRGR GYRSARGQGG
PGGRSRDSAR GSAGTTGRRG PARFTVVDEL EQARLLPAIY FIFSRAGCEG AVAQCVGSGL
RLTTPEQELT IRGIVEARCA NIPSEDLAVL GYWGWLDALT RGIAAHHAGM LPLFKETVEE
LFSAGLVKIV FATETLALGI NMPARSVVLE KLVKWDGSSH VDLTPGEYTQ LTGRAGRRGI
DVEGHAVVVD HPGLDPVVLA GLASKRLYPL KSSFAPTYNM AVNLVSQVGR ERAREILETS
FAQFQADRGV VGLAKQAAAS SEALDGYAEA MLCEQGDFRE YMRLRKALSA REAELSKRAT
NERRSEVVRA LESLRRGDLV EIPSGRRAGY ALVLDPGSDG GFDGPRPTIL STDRQVKRLT
VADVPQGLRV VGEVRIPKTF NARNPGSRRD LVSSMNTRLG AFADTADGRV PKRSGSTRRG
AGDDAEVARI QAALRAHPCH SCPDRETHAR WALRWESLDK EHKALMRRIE GRTGSIAKVF
DRICDVLRTL EYLERDEHGA LVVTRAGESL KRLYAESDLL LAECLRRGVW DDLDPAGLAA
AVSTVVYSAR RDDREEEPHV PGGPDGRLAR ALDETVRIWS ALDDLEDAHR LEATGPLDMG
LVEAMHRWAS GRSLDVVLKG TDLAAGDFVR WCKQVIDVLG QLTKASPQDH VRVTADKAID
ALRRGVVAYS SV
|
|---|
| |