| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_18490 |
|---|
| Symbol | |
|---|
| ID | 8633484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 2056061 |
|---|
| End bp | 2057680 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | |
|---|
| Product | predicted TIM-barrel fold metal-dependent hydrolase |
|---|
| Protein accession | YP_003314609 |
|---|
| Protein GI | 269795154 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0105695 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.337181 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTTCCA TCGTGCTCCG TGGCGGCATC ATCCACTCTC CGGCAGACCC CTTCGCCGAG
GCTGTCCTGG TCGACGACGG GGTGGTGACC TGGATCGGCG CGAACGACAC GGCCGACGGT
CTCGCCGCCC GGGCGGACCG TGTCGTCGAG CTCGACGGGG CACTGGTGGC CCCCGGCTTC
GTCGACGCGC ACGTGCACGT CCTCGAGGAG GCGCTCGCCC GCGCAGGGCT GGACCTCGAC
GGGCTGGGGT CGCGTGCCGC GACGATCGAC GCCGTCGCCG CGCGCAGCAG GACGCTCCGG
GCGGAGGACG GCCCGCTCCT GGCCCACGGG TGGGACGAGA GCGTGTGGGA CGACGCGCGA
CGCCCGACCG CCCACGAGCT CGACGCCGCG ACAGGCGGCG CGGCCGTCTA CGCCGCGCGT
GCCGACCTGC ACTGCGCGGT CGTGTCCAGC CGCCTCGCCG ACCTCGCCGG CCTGCGGTCC
CTGCCCGGGT GGCGCGAGGA CGGCTTCGTC ACGGGGGAGG CGCACCTCGC CGCCCGGGCT
CTCGCCCGCA CCCTGACCCC GGAGGCACGG GACCGCCTCG TCCTCTCGGC CTTGCAGGCC
GCCGCGGCGA ACGGCGTGGT GAGCGTGCAC GAGGCCTCCG CGCCCGGCAT CGACACCCGT
GAAGGTCTGG CCTCCCTCAT CGCGCTCACC GCCTCCGACG ACTCCGGGCT GCCCCTCGTG
GTGGGGTACC GCGGGGAGCT GGTCCGCACC GCCGACGAGG CGCGCGAGAT CGCCGACCAG
ATCCCGGGGC TCCGCGGGCT CGCGGGCGAC CTCAACGTCG ACGGGTCGAT CGGGGCGCGC
ACGGCCGCGC TGCGGGCGCC CTACTCTGAT GCCCCGGGGA CCTCGGGATC GCTGTCCCTC
GACGCCGACC AGGTCCGCGA CCACGTGCTC GCCGTGACCG AGGCAGGGCT GCAGGCCGGG
TTCCACGTCA TCGGCGACCT GGCCATGGAC ACCGCGGTCG CCGGGCTCGT CGCGGCCGCC
GAGACGTCGC GGAGCGCGAT GCGCAGGCTC GGGCACCGGC TCGAGCACGC CCTCATGCTC
GACGACGCGG CCCTGCAGGC GCTCGTACCG CTCGGCGTGG GCCTGAGCAT GCAGCCGGGC
TTCGACGCCG CCTGGGGAGC ACCTGGCGGC CTCTACGAGG CGCGGCTGGG GGAGCGGGCC
ACCCAGATGC ACCGCCTCGC CGCGATCGCC TCGGCCGGGA TCCCGACCGC CTTCGGCTCG
GACGCGCCCG TCACCGCGCT CGCACCCTGG GCTGCGGTCC GCGGTGCGGT GTTCCACCAC
ACGGCCGACC AGCGGATCTC CGCCCGTGCT GCCTTCCGCG CCTCGACCCG TGGCGGGTGG
CGCCTCGCCG GGATGGACCA CACCGGTGCC GGGGAGATCC GCGTCGGGGC GCCCGCGCAC
CTCGCCGTGT GGCGGGCCGA GCAGGTGACC GTCCAGTCGG AGGCCTCCGG GCTGTCGTCG
TGGAGCACCG ACGCGCGGTC GGGGACACCG CTGCTGCCCG ACCTCACCGA CCCCGAGACG
TACCCCGAGT GCGTCATGAC GCTGCGTGCC GGACGGCCGG TCTACGACGC GCTCGGCTGA
|
|---|
| Protein sequence | MTSIVLRGGI IHSPADPFAE AVLVDDGVVT WIGANDTADG LAARADRVVE LDGALVAPGF
VDAHVHVLEE ALARAGLDLD GLGSRAATID AVAARSRTLR AEDGPLLAHG WDESVWDDAR
RPTAHELDAA TGGAAVYAAR ADLHCAVVSS RLADLAGLRS LPGWREDGFV TGEAHLAARA
LARTLTPEAR DRLVLSALQA AAANGVVSVH EASAPGIDTR EGLASLIALT ASDDSGLPLV
VGYRGELVRT ADEAREIADQ IPGLRGLAGD LNVDGSIGAR TAALRAPYSD APGTSGSLSL
DADQVRDHVL AVTEAGLQAG FHVIGDLAMD TAVAGLVAAA ETSRSAMRRL GHRLEHALML
DDAALQALVP LGVGLSMQPG FDAAWGAPGG LYEARLGERA TQMHRLAAIA SAGIPTAFGS
DAPVTALAPW AAVRGAVFHH TADQRISARA AFRASTRGGW RLAGMDHTGA GEIRVGAPAH
LAVWRAEQVT VQSEASGLSS WSTDARSGTP LLPDLTDPET YPECVMTLRA GRPVYDALG
|
|---|
| |