Gene Sked_13540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_13540 
Symbol 
ID8632990 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp1526054 
End bp1527796 
Gene Length1743 bp 
Protein Length580 aa 
Translation table11 
GC content70% 
IMG OID 
Product2-isopropylmalate synthase 
Protein accessionYP_003314128 
Protein GI269794673 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.221191 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAGCGAC CGACGCCGAT GCCGGTCCAC AAGTACCGCC CCTACTCCGA GCAGTTCCGC 
GTGGAGGTCC CCGACCGCAC GTGGCCGGAC AAGGTCATCA CCCAGGCCCC GCGCTGGTGC
GCGGTCGACC TGCGCGACGG GAACCAGGCG CTCATCGAGC CGATGAACGC CGAGCGCAAG
CTGCGCATGT TCGAGCTGCT CGTCTCGATG GGCTACAAGG AGATCGAGGT CGGGTTCCCC
TCGGCCTCGC AGACGGACTT CGACTTCGTC CGCATGCTCA TCGACGACGG GCTGATCCCC
GACGACGTGG TGATCCAGGT GCTGACGCAG TCCCGCGAGC ACCTCATCGC CCGCACCTAC
GAGGCGATCG CGGGCGCCAA GCAGGCGATC GTCCACCTGT ACAACTCGAC CTCGACGCTC
CAGCGCGACG TCGTGTTCCG CACGGACATG GACGGCATCG TCGACATCGC CCTCGAGGGC
GCGCGCCTGT GCCGCAAGTT CGAGCAGACG ATCCCCGAGA CCCAGGTCTT CTACGAGTAC
TCGCCCGAGT CCTACACCGG GACCGAGCTC GAGTTCGCCG CGCGCATCTG CAACGAGGTC
ATCGAGGTCT TCGAGCCGAC CCCGGACCGC AAGGTGATCA TCAACCTGCC CGCCACGGTC
GAGATGGCCA CGCCCAACGT GTACGCCGAC TCGATCGAGT GGATGAACCG TCACCTGGTG
CACCGCGAGA ACGTGGTCCT GTCGCTGCAC CCGCACAACG ACCGCGGCAC CGCGGTGGCG
GCCGCCGAGC TCGGCTACCA GGCCGGCGCC GACCGCATCG AGGGCTGCCT GTTCGGCAAC
GGCGAGCGCA CCGGCAACGT CGACCTGGTG ACCCTGGGCA TGAACCTGTT CAGCCAGGGC
GTCGACCCGC AGATCGACTT CACCGTCGGC GGCGGCATCG ACCACATCCG CCGCACCGTC
GAGCACTGCA ACCAGCTGGC GGTCCACGAG CGCCACCCCT ACGCCGGTGA CCTCGTCTTC
ACGGCCTTCT CGGGCTCGCA CCAGGACGCG ATCAAGAAGG GCCTCGACGC GATGGCCGCC
GAGGCCGACG CGAAGGGCGT CTCGGTCGAC GACCTCGTGT GGGGCGTCCC GTACCTGCCG
ATCGACCCGC GCGACCTGGG GCGCTCCTAC GAGGCCGTCA TCCGGGTCAA CTCGCAGTCC
GGCAAGGGCG GCATCTCGTA CCTGCTCAAG ACCGAGCGCC ACCTGGACCT GCCGCGCCGC
CTGCAGATCG AGTTCTCGCG CGTGGTGCAG TCGGTGACCG ACTCCGGCGG CCGCGAGGTC
ACCGGCGAGG ACATCTGGCA GATCTTCGCC GACGAGTACC TGCCGGCCCC GGCCGACGGC
CCGCTCGAGG CCTGGGGACG CCTGTCCCTT CGCGGCACGC GCGCCTCGAG CGTCGAGGGC
GGCCTCGACA CCCTGTCCGT CGACCTGGTC GACGGCGGCA CGCCGATCAC GCTCGAGGGC
ACCGGCAACG GCCCGATCGC GGCCTTCGTG GACGCGGTCA GCCAGGTGGG CGTCGACGTC
CGCGTCCTCG ACTACGCCGA GCATGCTCTC TCCGAGGGTG GCGACGCGAC CGCGGCTGCC
TACGTCGAGT GCGCCGTCGG CGACGAGGTC CTGTGGGGCG TGGGCATTGA CCCGTCGATC
ACCACGGCCT CCCTCAAGGC GATCATCTCG GCCGTCAACC GCGAGGGCCG CACGGCCGCG
TGA
 
Protein sequence
MQRPTPMPVH KYRPYSEQFR VEVPDRTWPD KVITQAPRWC AVDLRDGNQA LIEPMNAERK 
LRMFELLVSM GYKEIEVGFP SASQTDFDFV RMLIDDGLIP DDVVIQVLTQ SREHLIARTY
EAIAGAKQAI VHLYNSTSTL QRDVVFRTDM DGIVDIALEG ARLCRKFEQT IPETQVFYEY
SPESYTGTEL EFAARICNEV IEVFEPTPDR KVIINLPATV EMATPNVYAD SIEWMNRHLV
HRENVVLSLH PHNDRGTAVA AAELGYQAGA DRIEGCLFGN GERTGNVDLV TLGMNLFSQG
VDPQIDFTVG GGIDHIRRTV EHCNQLAVHE RHPYAGDLVF TAFSGSHQDA IKKGLDAMAA
EADAKGVSVD DLVWGVPYLP IDPRDLGRSY EAVIRVNSQS GKGGISYLLK TERHLDLPRR
LQIEFSRVVQ SVTDSGGREV TGEDIWQIFA DEYLPAPADG PLEAWGRLSL RGTRASSVEG
GLDTLSVDLV DGGTPITLEG TGNGPIAAFV DAVSQVGVDV RVLDYAEHAL SEGGDATAAA
YVECAVGDEV LWGVGIDPSI TTASLKAIIS AVNREGRTAA