| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_12740 |
|---|
| Symbol | |
|---|
| ID | 8632910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 1440980 |
|---|
| End bp | 1441570 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | isopentenyl-diphosphate delta-isomerase |
|---|
| Protein accession | YP_003314050 |
|---|
| Protein GI | 269794595 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.251434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGACAG CCACGTCGGC CCAGGGCGCA GACTCCGCCC CCCAGACCGC ACAGGTCGAC
GACCACGTGA TCCTCCTCGC CGAGGACGGC ACCCGGATCG GCCACACCCC GCGGGCCACG
GTCCACGGGC TCGACACCCC GCTCCACCTC GCCTTCTCGT GCTACCTGCT GCGCGCCGAC
GGACAGGTGC TGCTCACGCG CCGTGCCCTC GCCAAGCGCA CGTGGCCGGG CGTCTGGACC
AACTCCTTCT GCGGGCACCC TCGCTTCGGC GAGGAGATGT CGGATGCCGT CCGCCGCCAC
GCGGCCCACG AGCTCGGCCT CGAGGTCGAC GGCATCGAGC TCGTGCTCCC GGACTTCCGG
TACCGCGCCG TCGACGCCTC CGGCGTCGTC GAGAACGAGA TCTGCCCCGT CTTCTTCGCG
ACCACCACCC AGGACCCTCA GCCCAACCCG GACGAGGTCA TGGACCTCGC CTGGACGAGC
ATGCAGGACC TCGGCACCGC CATCACGGCG ACCCCCTGGG CCTTCAGCCC GTGGATGGTC
AGCCAGCTCA ACCAGCTCGG CGAGATCGAC CTGGGGGCCG GGGACGCATG A
|
|---|
| Protein sequence | MTTATSAQGA DSAPQTAQVD DHVILLAEDG TRIGHTPRAT VHGLDTPLHL AFSCYLLRAD
GQVLLTRRAL AKRTWPGVWT NSFCGHPRFG EEMSDAVRRH AAHELGLEVD GIELVLPDFR
YRAVDASGVV ENEICPVFFA TTTQDPQPNP DEVMDLAWTS MQDLGTAITA TPWAFSPWMV
SQLNQLGEID LGAGDA
|
|---|
| |