| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_11560 |
|---|
| Symbol | |
|---|
| ID | 8632792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 1337833 |
|---|
| End bp | 1338738 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | carbohydrate ABC transporter membrane protein |
|---|
| Protein accession | YP_003313933 |
|---|
| Protein GI | 269794478 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.626059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00742077 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCA CCACGACCGC CGCACCGACC CCGGCGGTGG CTCCTCCCGG TGCACGCGCA
CCGCGGGCAC GCCGCCGCAG GTCGGGGCCG AACGCCGGCG GGACCCCGCT GGTCTACCTG
GCGGCGCTCG TCGTCGCCGC GATGACCCTC GGACCCGTCC TCTACGCCGT CCTCGGCGGC
TTCCGGTCGA ACGCCCAGCT GGCCAACGAC CCCGTGGCGC TGCCCGACCC GTGGGTGCTG
AGCAACTACA CGGACGTGCT GCAGTCCTCG CAGTTCTGGC AGCTCGCCCT CAACTCCTCG
GTCATCGCGC TCGTCACGAC GGCCATCGTG TCGGTCTTCG GGGTCATGGC CGCCTACCCG
CTGGCCCGCT ACGCCTTCAA GGGGCGCGAC GCGCTCTTCA TGGTGTTCAC CCTCGGGCTG
CTGTTCCCGC TGACCGTCGC GATCATCCCG CTGTTCCTCA TGGTCCGTGA CCTCAACCTC
TCGAACACCT TCTGGGGCGT CGCGCTGCCC CAGGCAGCCT TCGCGCTCCC CATGACCGTC
GTGATCCTGC GACCGTTCCT GCGGGCCCTC CCCAAGGAGC TCGAGGAGGC GGCGATGCTC
GACGGCACGT CGCGCGTAGG CTTCTTCTGG CGGATCCTGC TGCCGCTGTC TGGCCCGGCG
CTCGTGACCG TCGGGGTGCT TGCCTTCGTC GGCTCGTGGA ACGCGTACCT GCTCCCGCTC
CTCGTGCTCA ACGACCCGGC GGCGCAGACG CTGCCGCTCG GTGTCGCGAC CTTCTCGAGC
GAGCACGCCC AGGACACCGC GGGTGTCCTG GCCTTCACCT CGCTGGCCAT GATCCCCGCG
CTGGTGTTCT TCTTGGCCAT GCAGAAGCGC ATCGTCAACG GCCTCCAGGG AGCGGTCAAG
GGATGA
|
|---|
| Protein sequence | MSATTTAAPT PAVAPPGARA PRARRRRSGP NAGGTPLVYL AALVVAAMTL GPVLYAVLGG
FRSNAQLAND PVALPDPWVL SNYTDVLQSS QFWQLALNSS VIALVTTAIV SVFGVMAAYP
LARYAFKGRD ALFMVFTLGL LFPLTVAIIP LFLMVRDLNL SNTFWGVALP QAAFALPMTV
VILRPFLRAL PKELEEAAML DGTSRVGFFW RILLPLSGPA LVTVGVLAFV GSWNAYLLPL
LVLNDPAAQT LPLGVATFSS EHAQDTAGVL AFTSLAMIPA LVFFLAMQKR IVNGLQGAVK
G
|
|---|
| |