| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_10160 |
|---|
| Symbol | |
|---|
| ID | 8632652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 1177235 |
|---|
| End bp | 1179775 |
|---|
| Gene Length | 2541 bp |
|---|
| Protein Length | 846 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | beta-mannosidase |
|---|
| Protein accession | YP_003313799 |
|---|
| Protein GI | 269794344 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.998616 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGCC AGACGCTGCA CACCGGATGG ACCCTGCGAG CCACGGGCGG ACCGGTGCCC
ACCGAGCTGG CGCCACGGCT CCTCGACGCC GACGTCCCGG CGCAGGTGCC CGGGACCGCG
CACACCGACC TCCTCGACGC CGGGCTGATC CCCGACCCCT ACCTCGACCT CAACGAGACC
GCCCTCGCCT GGATGCACCT GGTCGACTGG CGCTACCAGA CCACCTTCAC CGCGACGGCC
GCCGCGGACG GCGAGCACCT CGACCTCGTC TTCGACGGCC TCGACACCGT CGCGACCGTG
ACGCTCAACG GGACCGTCGT CGGGCGCACC GCCAACCAGC ACCGCGGGTA CCGGTTCGAC
GTCGCAGGGC TCGTCGTCGA GGGCGAGAAC CACCTGGTCG TCGACCTGCG GTCCGCCCTC
GCCCACGCCC GCGAGGTCGC CGACGAGATC GTGCTGCGCC CCCGCGCCTA CGACCACCCC
TTCAACATGG TCCGCAAGAT GGCCTGCTCC TTCGGCTGGG ACTGGGGGCC CGACCTCCAG
ACCGCGGGCA TCTGGAAGGG CGTCCGCCTC GAGCGCTGGA CCCTCGCGCA CCTCCAGCAG
GTCCGCCCCC TCGTGACCGT CGGGCCCGAC GGCACCGGCC ACGTCGACGT GCACGTCGAC
CTCGGACGCG GCGTCGACGA CCGCCACCAC GGGGACGTCG TCCTCACCGC CGCGCTCGCG
GCCGGCCACG GCATCGGGGA CCACGTCGCG ACGGTCACGG TCACACCCGG GGAGTCGACC
GCCGTCGTGC ACCTCGAGGT CCCGGGCGCC CCGCTCTGGT GGCCGGTCGG CTACGGCGAG
CACCCCCTCT TCGACCTCTC GCTGACCCTC GGCACGACCG ACGGCGAGAC GCTCCAGACC
TACGAGCGCC GCATCGGCTT CCGCACCGTC GAGCTCGACA CGACTCCCGA CGACGTCGGC
ACGCCCTTCA CGATCTCGGT CAACGGCCAG GCGGTCTTCG TCAAGGGCGC CAACTGGATC
CCGGACGACC ACCTGCTCAC CCGCATCACC CGCGACCGCC TCGAGCGACG CGTCGACCAG
GCGCTCGACG CCAACATGAA CCTGCTGCGC GTCTGGGGCG GCGGCATCTA CGAGACCGAG
GACTTCTACG ACGTCTGCGA CGAGCGCGGC GTCATGGTCT GGCAGGACTT CCTCCTCGCC
TGCGCGGCCT ACCCGGAGGA GGAGCCGGTC TGGTCCGAGA TGGAGGCCGA GGCGCGCGAG
AACGTCGCGC GGCTCACCCC GCACGCCTCG CTGGTGCTGT GGAACGGCGG CAACGAGAAC
CTCTGGGGCT ACCTCGACTG GGGCTGGCAG CAGGACCTCG AGGGTCGGAC CTGGGGCTTC
CGGTACTACA CGGAGCTCTT CCCGGCGATC GTGGCCGAGC TCGACCCGAC GCGCCCGTAC
TGCGACGGCT CGCCCTACAG CCCGGGCTAC AGCGCCGAGG TCGACGGCGG GGCGCCGACC
TTCCACCCGA ACGACGCGGA CCACGGCACG CGTCACGAGT GGGAGGTGTG GAACCGCGTC
GACTACACCA CCTACCGCGA CCAGGTCCCG CGCTTCAGCT CGGAGTTCGG CTTCCAGGGG
CCGCCCGCGT GGACCACGCT CACCCGGTCG ATCCCGGAGG CGGCGCTCAC CAAGGAGTCG
CCGGAGTTCC TGCTCCACCA GAAGGCCGCC GACGGCAACC TCAAGCTCGA CCGCGGGCTC
GAGCCGCACC TGCCCACGCC GTCGGCCTTC GACGACTGGC ACTGGACCAC CCAGCTCAAC
CAGGCGCACG CCGTGCAGTA CGGCATCGAG CACTACCGCT CGTACTGGCC GCGGACGGCC
GGCTCGATCG TCTGGCAGCT CAACGACTGC TGGCCCGTGA CGTCGTGGGC CGCGGTCGAC
GGCGACGAGC GGCCCAAGCC GCTGTTCTAC GCGCTGCGCC ACGCCTACGC GGACCGGCTG
CTCACCGTGC AGCCGCGCGA GGGTGTCCCG ACCCTCGTGG TGGTCAACGA CCACGCCGAG
GCCTGGGAGG GCGAGGTGAC GCTGCGTCGC GTGGACGTCA CCGGCGCCGC GCAGGGCGAG
ACCGAGCAGG TCTCGGTCGC GGTGCCGGCG CGCTCGGTCC ACGAGGTGCC GCTCTCGGCC
GCGCTGACGA CCCCCGGTGA CGCGACGCGC GAGGTGCTCG TCGCCGAGCT CGACGACGTC
CGCGAGATCC ACCTCTTCGC CGAGCCCAAG GACCTGGTGC TCGACCCGGC CGCGGTGGAC
GTCGAGGTCC GGGCCGTCGA CGGTGGGCTC GTCGTCGACG TGTCGGCCGC GACCCTGGCC
CTCGACGTGT CGGTCCTCGC CGACCGCATC GTCCCCGACG GGGTCGTCGA CGACATGCTC
GTCTCCCTGC TCCCGGGGGA GTCGCACACC TTTGTCGTGT CGAGCGGCAC CGGGGTCTCG
GCAGAACGTG TCGCCGAGCT GGGCACGCCG GAGTCCGTGG CGTCGGTGGT CCGGTCGGTC
AACAGCTGCG CGAGGTCCTG A
|
|---|
| Protein sequence | MISQTLHTGW TLRATGGPVP TELAPRLLDA DVPAQVPGTA HTDLLDAGLI PDPYLDLNET
ALAWMHLVDW RYQTTFTATA AADGEHLDLV FDGLDTVATV TLNGTVVGRT ANQHRGYRFD
VAGLVVEGEN HLVVDLRSAL AHAREVADEI VLRPRAYDHP FNMVRKMACS FGWDWGPDLQ
TAGIWKGVRL ERWTLAHLQQ VRPLVTVGPD GTGHVDVHVD LGRGVDDRHH GDVVLTAALA
AGHGIGDHVA TVTVTPGEST AVVHLEVPGA PLWWPVGYGE HPLFDLSLTL GTTDGETLQT
YERRIGFRTV ELDTTPDDVG TPFTISVNGQ AVFVKGANWI PDDHLLTRIT RDRLERRVDQ
ALDANMNLLR VWGGGIYETE DFYDVCDERG VMVWQDFLLA CAAYPEEEPV WSEMEAEARE
NVARLTPHAS LVLWNGGNEN LWGYLDWGWQ QDLEGRTWGF RYYTELFPAI VAELDPTRPY
CDGSPYSPGY SAEVDGGAPT FHPNDADHGT RHEWEVWNRV DYTTYRDQVP RFSSEFGFQG
PPAWTTLTRS IPEAALTKES PEFLLHQKAA DGNLKLDRGL EPHLPTPSAF DDWHWTTQLN
QAHAVQYGIE HYRSYWPRTA GSIVWQLNDC WPVTSWAAVD GDERPKPLFY ALRHAYADRL
LTVQPREGVP TLVVVNDHAE AWEGEVTLRR VDVTGAAQGE TEQVSVAVPA RSVHEVPLSA
ALTTPGDATR EVLVAELDDV REIHLFAEPK DLVLDPAAVD VEVRAVDGGL VVDVSAATLA
LDVSVLADRI VPDGVVDDML VSLLPGESHT FVVSSGTGVS AERVAELGTP ESVASVVRSV
NSCARS
|
|---|
| |