| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_08200 |
|---|
| Symbol | |
|---|
| ID | 8632456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 930647 |
|---|
| End bp | 931873 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | L-threonine ammonia-lyase |
|---|
| Protein accession | YP_003313605 |
|---|
| Protein GI | 269794150 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0196535 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGCAGC CCGGCCCGGC GCTGTCCGTC GGCATCGAGG ACATCCGTGA CGCCGCCCGC
GCGCTGGACG GCGTCGCGAC GGTCACGCCG GTCGAGCGCA GCAGCGCCCT CGCCGGGGTG
GTCGGCGTCC CCGTCTACCT CAAGTGCGAG AACCTCCAGC GGTCCGGGTC CTTCAAGATC
CGCGGCGCCT ACGTCCGCAT GTCGCGGCTC AGCGAGGCCG AGCGTGCCCG CGGCGTCGTC
GCGGCGAGCG CCGGCAACCA CGCGCAGGGT GTCGCCCTCG CGGCCCGGCT GCTGGGCATC
CGCTCGGTGG TCTACATGCC GACGGACGCC GCCCTGCCCA AGGTCGCGGC GACCCGGGAG
TACGGCGCCG AGGTGCGGCT CGTCGGGACC ACCGTCGACG ACGTCCTGAC CGCGGCCCGC
GAGGAGTCCG AGCGCTCGGG CGCCGTGCTG ATCCACCCTT TCGACCACGT CGACGTCGTG
GCGGGCCAGG CGACCGTCGC CCTCGAGATC CTCGAGCAGG TGCCGGACGT CAGGACCGTC
GTCGTGCCCG TCGGTGGCGG CGGGCTCGGT GCTGGAGTGG TCGCCGCGAT GGCGGCCGTC
GCGCCGCACG TGCGTGTGGT CGGGGTGCAG GCGGCCCGCG CCGGCGGCTA CCTCCAGTCG
CTCGCGGCGG GGGAGCCCAC CAAGACGGTG ACCGCGTCGA CCATGGCCGA CGGCATCGCC
GTGAGCACCC CGGGGCACGT CCCGTTCCAG ATCATCAAGG ACGGCGGTGG CCACATCCGT
ACGGTGTCCG AGGAGGACAT CTCGCGGGCG CTGCTGTTCG TCGCGGAGCG CGCCAAGCTC
ATCGTCGAGC CGGCTGGGGT CGCCGGTGTC GCGGCGCTCA TGGCCCACCC CGAGGAGTAC
GACGACGGCC CCGTGGTCGC CGTCCTGTCG GGCGGGAACA TCGACCCGCT CGTGCTGCTG
CGGGTGCTCC GCCACGGGCT CGCGTCCGCC GGCCGGTACA TGCAGCTGCG GGTGCGGCTC
GTCGACCGGC CCGGTGCGCT CGCCGACCTG CTGCAGGACC TCGCGCGCTC CGGTGGGAAC
ATCATGCACG TGGACCACGT GCGCACCGGT GTCGACCTCG CGATCGACGA GGTCGAGGTG
ACCATGCAGG TCGAGACCAA GGGGCCCGAG CACTGCGCGG CGCTCCTCGA CCACCTGCGC
GGCGAGGGGT ACCGGATCTC CGAGTGA
|
|---|
| Protein sequence | MRQPGPALSV GIEDIRDAAR ALDGVATVTP VERSSALAGV VGVPVYLKCE NLQRSGSFKI
RGAYVRMSRL SEAERARGVV AASAGNHAQG VALAARLLGI RSVVYMPTDA ALPKVAATRE
YGAEVRLVGT TVDDVLTAAR EESERSGAVL IHPFDHVDVV AGQATVALEI LEQVPDVRTV
VVPVGGGGLG AGVVAAMAAV APHVRVVGVQ AARAGGYLQS LAAGEPTKTV TASTMADGIA
VSTPGHVPFQ IIKDGGGHIR TVSEEDISRA LLFVAERAKL IVEPAGVAGV AALMAHPEEY
DDGPVVAVLS GGNIDPLVLL RVLRHGLASA GRYMQLRVRL VDRPGALADL LQDLARSGGN
IMHVDHVRTG VDLAIDEVEV TMQVETKGPE HCAALLDHLR GEGYRISE
|
|---|
| |