Gene Sked_06030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_06030 
Symbol 
ID8632240 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp681629 
End bp683332 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content70% 
IMG OID 
Productserine phosphatase RsbU, regulator of sigma subunit 
Protein accessionYP_003313397 
Protein GI269793942 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.486099 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.150997 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCTCTG AGTGGTTCTC CCACACCGCC CACAGCAGCC AGTCCGGCCG TGAGGCGATG 
GCCTTCCCCT GGCACGAGAC CCCGCTGGGG GACCCGTCCA CCTGGGACGA GACGCTGCGG
CAGTCCGTCC GGCTGTGCTT CAGCACGCAG TTCCCGGTGA TGATCGCCTG GGGCCCGGAG
ATGACCATGA TCTACAACGA CGGCTACGCG CAGATCCTCG GGCCGAACAA GCGCCAGCAC
GCGATGGGCA AGCCCATCCG CGAGGTCTGG ACCGAGATCT GGGACGACGT CGAGACCATG
TTCGGGATGG TCTTCTCGAC CGTCGCCCCC GTGGGCGGCG CGGAGCACAA GATCGTCATG
AACCGGTCGG GCTTCGACGA GGAGACCTAC TTCACCTTCT CGTGCAGCCC GCTCGTCGAC
TCCACCGGTC AGGTGGTCGG CGTCATGGAC ATCTCCGCGG AGATCACCGA CCAGGTGGTC
TCCGTGCGCA GGCTCTCCAC CCTCGACGAC CTGCACAGCC AGATGCAGAC CAGCAGGGGC
GACGGTGTCG ACCGCATGGG CCTCGCCCTG GAGGTCCTGG CCGAGAGCGT CGACCTGAGC
CGGAGCGCGA TCATGCTCGA GTCCGACGGG CAGCTGGTCG CGGTCCCCGG CAGCGACGTC
GGCCTCGACC TGACGGACCC GGAGGGCCTC TACGCCGCCG TGCTGCGCGA GGGACGCACG
CAGTTCGTCG GGCACGACGT CGCCGTGCCG CTGGTCGTCG ACGACCACGG CTCCATGGTC
GGGCTGCTCG TGGCCGAGGG GTCCCCGATG CGCCCGGTCG ACTCCTCTCT CGTCTCCTTC
GTCGAGCTCA TCGCCTCTGC GCTCTCGGGC GCGCTCCAGG CGGTCAGCGC GCAGCGAGCC
GTCCTCGACG CCCGTGACGC GCGCACCGCG CTCATCGAGG CGACCGAGCG CCAGTCACGA
GAGACCTCGA TCGCGCTGCA GCAGTCGATG CTCACGCCGC CCGTCCAGCC CTGCGGTCTC
GACCTCATGG CGTGGTACCA GCCGTCCCGC GAGGACCTGC AGATCGGTGG GGACTGGTAC
GACTCGTTCC TCACCAAGAA CGGGTGCACC ACCCTGGTGG TCGGTGACGT GACCGGGCAC
GACCACGTCG CCGCGGCAGC GATGGGTCAG CTCCGCGGCC TCGTCCGCGC GATCGCCTTC
GACAGCGAGC AGAGCCCGGC GCGGATCTTC GAGCGGGCGG ACACCGCCAT CGCGGGCCTC
GACCTGGGGA ACCACAGCAC CGCGACCGCG GTCGTGGCGC AGATCGAGGA GCCCGCGCCC
GGCTCGACCG GCACCTCGCG CACCCTGCGG TGGTCGAACG CGGCGCACCC CTACCCTGCG
GTCGTCCGTG CGGACGGCAG CGTCGAGCTG CTGCGCCGGA CCAACGACAT CCCGCTGGGC
ATCACCCAGG GCTTCGACCG CCGAGAGCAC GAGGAGCTCC TGCACGAGGG TGACACCCTC
GTGCTCTACA CCGACGGTCT CGTCGAACGT CGGGGCGAGA TCCTCTCGAC GGGCCTCGCG
CAGCTCACCG ATGCCCTGGC AGACGGGCAC GCACGCACGA TCGTCGACCT CGCCGAGCAC
GTCCTGTCGT CTCTCGCGCC GACCCCCACG GACGACGTCG CGCTCGTCCT GGTGCGCGTG
CTGCCCGCAG GTGACGCCCG ATGA
 
Protein sequence
MISEWFSHTA HSSQSGREAM AFPWHETPLG DPSTWDETLR QSVRLCFSTQ FPVMIAWGPE 
MTMIYNDGYA QILGPNKRQH AMGKPIREVW TEIWDDVETM FGMVFSTVAP VGGAEHKIVM
NRSGFDEETY FTFSCSPLVD STGQVVGVMD ISAEITDQVV SVRRLSTLDD LHSQMQTSRG
DGVDRMGLAL EVLAESVDLS RSAIMLESDG QLVAVPGSDV GLDLTDPEGL YAAVLREGRT
QFVGHDVAVP LVVDDHGSMV GLLVAEGSPM RPVDSSLVSF VELIASALSG ALQAVSAQRA
VLDARDARTA LIEATERQSR ETSIALQQSM LTPPVQPCGL DLMAWYQPSR EDLQIGGDWY
DSFLTKNGCT TLVVGDVTGH DHVAAAAMGQ LRGLVRAIAF DSEQSPARIF ERADTAIAGL
DLGNHSTATA VVAQIEEPAP GSTGTSRTLR WSNAAHPYPA VVRADGSVEL LRRTNDIPLG
ITQGFDRREH EELLHEGDTL VLYTDGLVER RGEILSTGLA QLTDALADGH ARTIVDLAEH
VLSSLAPTPT DDVALVLVRV LPAGDAR