| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_04410 |
|---|
| Symbol | |
|---|
| ID | 8632078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 495706 |
|---|
| End bp | 496659 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | cold shock domain protein CspD |
|---|
| Protein accession | YP_003313240 |
|---|
| Protein GI | 269793785 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.528564 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCCAGG GAACCGTCCG CTGGTTCGAC GCCGAGCGAG GGTTTGGCTT CCTAGCCCTC
GACGACGGCG CCGATGACCT GTTCGTCCAC GCGTCCGAGA TCGTCGGCAA CGACGACGGG
ACCCAGTCGC TCCGCGAGGG CCAGTCCGTC GAGTTCGAGA TCGGCGAGGG CGACCGCGGT
CCGCAGGCCC GCCGAGTCCA GATCACCGGC GACAGCGCCG TCGAGGCAGC CCTGGGCCAG
CTCGGCACCG TCACCTGGTA CGAGCCGACC AAGGGCTACG GCTTCGTGAC GCCCGACGGT
GGAGGGGCCG AGATCTTCGC GCACAGCTCC GCCATCGTCG GTGGAGGCGT GATCGCCGAG
GGGCAGCGGG TCGCGTTCCT CGTCGTCGAG GGCGAGAAGG GGCCGCAGGC GGACCACCTC
CTGCCGCTCG CCGCTCAGGC TGCCGGCGCG CAGGCCGCGG GTCCCGCCGG TGCCGACGGC
GCTGACGGCA CCGTGAGCTG GTACGACGCG GGCAAGGGCT TCGGCTTCGT CACCCCCGAC
TCCGGGGAGC CGGACGCCTT CGTCCACGCC CGGTCGCTCG CCGGAGGAGC CACCGAGCTG
GTCGAGGGCG ATCGCGTGAG CTTCAGCGTC GTGCCCGGCG ACCGGGGTCC GCAGGCTCAG
GACGTCCGGG TCGTGGGCGG GACGGGCCGG GGTGCCCGCA GCGCCCCGGG CCGTGGCGGG
TCCCAGCGTC CGGAGGCGTC CCGCGCCCCG GCGCGCGGCG GCGAGGGTGT CGTGGCGCGC
TACGACGCAG AGCGCGGTTT CGGCTTCATC ACGCCCGACT CCGGCGGCCC GGACCTCTTC
GTGCACGTCT CGGTCGTGCG GGAGGGCCAG GAGCTGTACG AGGGCGACCG GGTCCGTTTC
CAGGTGCGGC AGAGCGACCG CGGGCCGCAG GCAGACCGGG TCGACCTGGC CTGA
|
|---|
| Protein sequence | MPQGTVRWFD AERGFGFLAL DDGADDLFVH ASEIVGNDDG TQSLREGQSV EFEIGEGDRG
PQARRVQITG DSAVEAALGQ LGTVTWYEPT KGYGFVTPDG GGAEIFAHSS AIVGGGVIAE
GQRVAFLVVE GEKGPQADHL LPLAAQAAGA QAAGPAGADG ADGTVSWYDA GKGFGFVTPD
SGEPDAFVHA RSLAGGATEL VEGDRVSFSV VPGDRGPQAQ DVRVVGGTGR GARSAPGRGG
SQRPEASRAP ARGGEGVVAR YDAERGFGFI TPDSGGPDLF VHVSVVREGQ ELYEGDRVRF
QVRQSDRGPQ ADRVDLA
|
|---|
| |