| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sterm_3844 |
|---|
| Symbol | |
|---|
| ID | 8599290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sebaldella termitidis ATCC 33386 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013517 |
|---|
| Strand | + |
|---|
| Start bp | 4080617 |
|---|
| End bp | 4083397 |
|---|
| Gene Length | 2781 bp |
|---|
| Protein Length | 926 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | |
|---|
| Product | outer membrane autotransporter barrel domain protein |
|---|
| Protein accession | YP_003310609 |
|---|
| Protein GI | 269122432 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA AATTTTTATT GGTTACCGCT CTTCTTATTG CTCTTACTGC ATGCGGAAGT
TCCGGCGGCG GTGGCGGCGG TGGAGGAGGA ACCCCGGCGA CGCCAATTCC ATCTACACCT
GATCCTGATC CCGGTACTGT TACTACTCCC GATGCACCTT ATGTTCCTTT TAACAAAAGT
GACCCGCATA AAGCAAGCAC AGTCAAAAGC AGCGGTATTA ACGGAACCGG AGTTACTATC
GGTATTATTG ATACAGGCTT TGACACTGCA AATGCAGAAT TCAAGGACAG CTTGAATAAT
CCGCGTATAA GCACGGATCC TTCATTTCCA GGGAACACTA ACGCACATGG AAGTCTTGTT
GCTGAAATAG CAGGTGGTAA GACAATTGGT ATGGCGCCTA ATGTTAAAAT AAAAGCAATT
TCCGCAGGAG TAACATGTGA TGACGGGACA GATACATGTG TTGATACTAC TTTGCCTATG
TACCAGTCAT TATATAATGA CGGTGTCAGA ATATTCAACC AGTCTTTTGG TGCTGACAAA
GCCACTGGTA CTGCCAAAAA ATCAGAGTTT CCTTTATCTG ATCCGGTTAT AGATTTTTTC
TATAAAAGAG CAACTACCGA CTCATTATTT ATTTGGGCCA CAGGAAACGG AAAATCTTCA
CAGCCTGGTG CTGAAGCAGG ACTTCCTTAC TTATATCCGG TTTTGGAAAA AGGATGGCTT
GCAGTTACTG CCATTGATTC CAATACAGGT CTTACTGCTG ATTATGCCAA TAAATGCGGT
CTTGCACAAA ACTGGTGTAT AGCAGCAGTT GGTGATTATA ACTTTTATGT AAAAAGTGTT
ACCGGTATGG GAACTTCATT TGCAGCTCCG GCAGTCACAG GTGCAGCAGC CCTTGTACAG
CAGAAATATC CATGGATGAA CGGAGACCTT CTGAGACAGA CACTTTTATC CACTGCAACT
GATATGGGGA AGCTCGGTGT AGACGATGTT TACGGATGGG GTCTTCTGAA TGTGGAGAAA
GCCGTAAAAG GTCCTGCTCT GTTTGATAAG AAGCTGGCTC TGGGAAACTA TGTTTACATT
AACTTTGATA CTGTTACTTC TTATTTCGGA AATGATATAA GCGGTGATGC CGGTGTCATA
AAAGAAGGTA CGGGAAAGCT TATTCTTACA GGAAGCAATA CTTACACAGG TGACAATATT
GTCAGAGGCG GTACTCTTAC AGTTAACGGA AAAGTAATAT CACAGGTTCA GATACAGACA
AACGGTACTT TCTCAAGTAA CGGGGGATAT GTTGATAATA ATGTTATAAA CAACGGAGGT
ACTTTTGTAA ATGAATCAAA CGGAACAACA ATATCGGGAA ACTACACTGC TTCTTCAGAT
TCTGTAACTG AAAGCACTGC CGGTTCCACA ATTAACGTAA AAGGAAAAGC ATCTCTTTCA
GGCTCTGTCC TAAGGGTAGC AACTCCTAAA GATGAAAATA ACAATCCTGT TTATGTAAGT
TCTTCTGACA GCATACAGGG AAAAGTTCTT GTTGCTGATC AGGGAATAGA AAACGGTTTT
GGCTCTGTGG AAACTCCAGT ACTTTTAAGT ACAGAACTTC AGTATAATTC AGATAATATA
GAACTGGAAA TGACTAGAAA AGATGTTTCT GCTTACTCTG CAGATACTTA TAACTCTGAT
GCTACAAGAG ATAACTCGGC TTCGAATCTA GAACAGGTCT TCAAGATACT TGACAGCGGT
ACAGGAAGTG AAGCATTCAG AACACAGGCT GCGTATTTAC AGCAGACTGC TTCTTCAAAA
ACACTAGCTG CATCTCTTGA CAGCTTATCA GGACAGATTT ATGCTTCGGC TCAGGCTCTT
ACCTTCCAGC AGTCACAGAC TATAAATAAG GATCTGTCTA ACAGACTGAC ATGGCTTGGA
AGCATGAATG AACCGGGTAA CAGCACAGGT GTCTGGTTTA ACGCGATTGG TTCAGTAGGA
AGACTTTACG AATCAGGATA TGCCGAAGCA GACACTTACC TTTACGGCGG ACAGATAGGT
ATCGACAAAG CCTTTAACAG TAAATTTATT CTCGGTGCTG CACTTGCATT CTCTGATTCC
AAGGCTGACT TTGACAGATA TGCCGGAGAA TCAAAGAGTC AAAATCTGGG CTTCTCATTA
TACGGAAGAT ACGGATTTGA AAATGACAGC TTCTATGTAC TTGGACGTAT TGGTGGAGCA
TATGTTTCGA GCGATGTAGA AAGAGATGTA ATTATAGGAT CATACACAGA AAATCTTTCT
GTAGACCATG ATGATTATGT ATTCTCAGGA TACGGGGAAG TAGGATACAA GTTCAAAACT
TCTCCGAATG TAAGTGTAAC TCCATTTGCC GGTCTTTTAT ATGACAGTGT AAACAGAGGA
AGCTTTTCTG AAGATAACAG TCTTTTCGGT CTGAAAGCTG ACAGTAAAAC ATATTCACAA
ACTTCAGGAT TATTAGGATT GCGTGCCGAG GTCGGATTCG ACTGGGCAGC CGGAAGATCA
ACAGTTCTTG GTTATCTCTC ATGGCAGGCA GCATTTAATG ATGAGGATTT AAGCTATGAT
GCATCTTATG TAGGACTTCC AGATGAGAAA TTCAAGGTAA AAGGTATCGG TCTTGCAAAT
GATACTGCAT GGACAGGTGT GGGAATTCTT ACAGAAGTGA GTCCTGTATG GTCATGGTAT
GCTAACTATG ACATGCAGAT AGAAAGATCA AAGGTAATGA ATAATGTATT CTCAGTGGGA
GCAAGAATAA ATCTTAACTA A
|
|---|
| Protein sequence | MKKKFLLVTA LLIALTACGS SGGGGGGGGG TPATPIPSTP DPDPGTVTTP DAPYVPFNKS
DPHKASTVKS SGINGTGVTI GIIDTGFDTA NAEFKDSLNN PRISTDPSFP GNTNAHGSLV
AEIAGGKTIG MAPNVKIKAI SAGVTCDDGT DTCVDTTLPM YQSLYNDGVR IFNQSFGADK
ATGTAKKSEF PLSDPVIDFF YKRATTDSLF IWATGNGKSS QPGAEAGLPY LYPVLEKGWL
AVTAIDSNTG LTADYANKCG LAQNWCIAAV GDYNFYVKSV TGMGTSFAAP AVTGAAALVQ
QKYPWMNGDL LRQTLLSTAT DMGKLGVDDV YGWGLLNVEK AVKGPALFDK KLALGNYVYI
NFDTVTSYFG NDISGDAGVI KEGTGKLILT GSNTYTGDNI VRGGTLTVNG KVISQVQIQT
NGTFSSNGGY VDNNVINNGG TFVNESNGTT ISGNYTASSD SVTESTAGST INVKGKASLS
GSVLRVATPK DENNNPVYVS SSDSIQGKVL VADQGIENGF GSVETPVLLS TELQYNSDNI
ELEMTRKDVS AYSADTYNSD ATRDNSASNL EQVFKILDSG TGSEAFRTQA AYLQQTASSK
TLAASLDSLS GQIYASAQAL TFQQSQTINK DLSNRLTWLG SMNEPGNSTG VWFNAIGSVG
RLYESGYAEA DTYLYGGQIG IDKAFNSKFI LGAALAFSDS KADFDRYAGE SKSQNLGFSL
YGRYGFENDS FYVLGRIGGA YVSSDVERDV IIGSYTENLS VDHDDYVFSG YGEVGYKFKT
SPNVSVTPFA GLLYDSVNRG SFSEDNSLFG LKADSKTYSQ TSGLLGLRAE VGFDWAAGRS
TVLGYLSWQA AFNDEDLSYD ASYVGLPDEK FKVKGIGLAN DTAWTGVGIL TEVSPVWSWY
ANYDMQIERS KVMNNVFSVG ARINLN
|
|---|
| |