Gene Sterm_0960 details

Gene Information

• Locus tag: Sterm_0960
• ID: 8596439
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sebaldella termitidis ATCC 33386
• Kingdom: Bacteria
• Replicon accession: NC_013517
• Strand: +
• Start bp: 1004827
• End bp: 1011537
• Gene Length: 6711 bp
• Protein Length: 2236 aa
• Translation table: 11
• GC content: 39%
• Product: outer membrane autotransporter barrel domain protein
• Protein accession: YP_003307759
• Protein GI: 269119582

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA ATAAAAAATT AATATTATCA TTTTTAGCGT TAAATGCAGT ACTACCAATT 
TCTGCATCAG GAGCAGAGTC TTCGGCATCA TTAAAGTATG ACAGACTCTA TAATAGCGTC 
ATAAAAAATC TAGAAGCCGG GAAATCAAAT GAGAAAAACT ATAAGCTCAT AGAAAAAGTC 
TTGAGTCAAA GAAATAAGGA ACTAAAAGAT CTGTATTTAC AGAGTGATTA TATAGTAAAA 
CCGGAATATC TCGAATGGCA GATATTTTTC AGCGGATTTT ACGAGGAGCA TAATGAGGGA 
AGAGATAATA CAGGAGAAAA TGCCGAGTAT TATTCAAAAG TAAACGGTTA TTATGAAACA 
GACGGTTCTT ATACAGTTAC AAGTGCTAAC AGAGCTTCAA CTTCAGGGAA ACCGTACCAG 
CCGCTGCAGA AGCCGAAAGA AATAGATTTA GGGGTAAATG TACCTATAAG CGGTATAACA 
AGACCGCCTC TGGAATTAAA TATAAGTCCG AACAGCGGTT CCAACGTAAC AGGAAATTAC 
GGTCCTGTGA CTATAGCAGC TCCGAGTGTT TCACCGGGAA TTGCCATAAG TAATTTCCAG 
CCTGCTAATC CTAATGTAAG CATTTTAGCG CCTTTTGTAA TAACACCTGT AACCTTTACC 
GGAACAGGAT TTGGTCAGGG AACATCGAAT ACTTTTACTC CCGGCGGAAA TCCACCAATG 
GAGAATTACA GCTATATTAT TTCAAATACT ACAGCAAACC TGAATACAGG AGGAACTTTT 
TCAGGAGATA TAAGTTTCGG TGATTCCTTA TCATCATTGA GTAACTGGAA TTCCAGTACA 
GCAAGCGGAA CACCGGCGGC ATTTTACAGT GCAGCGGCAG ATAAGAGAAT AACTATAAGC 
GGTGAATGGA ATGTAACGCA TGCTACTGCC GGACAGACAA TGTTCATAAG CTATAACCCT 
TATGAAGTCG GAAGAGGCGG TTCTACCGGA GCACAGTTTA TGGAATTTGC GGGAACTTTA 
AATCTTAATA ATACAGGGAC AGGCTCTTTA ATAGGAATAG AACATCAGGT ATTGTCAGGC 
GGAGGAGGCG GAGGAAGTGC TTTTAATGCT GGGGCTTTTC CTGTAGTGGT AAACTCGGGG 
ACAATAAATA TTGACAATGG TACACGTATG CTGGGAATAA TGATAGACCG TGAGTTTGCT 
ACAACAGATT TCGTTTTACC GTCTCAGACA TACAATACAG GTAAAATAGA ATTAAAAGCA 
AACAGCTCCC AGAGTATTGG GATAGATTTT GGTCAGTATG GAAACGGTGC ACTTAATACT 
GATGCTTATG TAGGGGATAT AGTAGTTGAC GGAACAGAAA ACTACGGTGT CAGAGTGTAT 
GATGTACATG CCGGGAATCT GAATTATTAT GATAATATAA GAGTTCACGG TGAGAAGAGC 
AATCCTCTTA TTTACGGAGC CGGCGGAGAC GGGTTAATAC ATATAAAGGG AACTAAAAAC 
ATAGGAATAG CTTTTGTAAA AAAAATAGGT GCTTCTGGTT ATGTTGATAA TGTCAGTAAT 
CTAAATATAC TGGTAGACGG TAATGAAGGA ATAGGGATAC TAAGAAGCGG AGACTATGTT 
GCTACACAGA CAGCGAATAT TCTTCTTACA GGTTCACAGT TGAAATCACT GATGTACGGA 
GATAATTCAA ATCAGAGTAT TCTTGTTCGT AGTGACAGAT TTACAACAGT TATAGATCCT 
ACTTTGGGGG CAAATATAGG ATCTAATGTG GGAGGAACAG TTACATTAGG CGGAATCGTA 
AAAAACGGAA ATGATAATAT TTTATTTCTT GCTAACGGAA CCGGACAGAC AGCTGCACAG 
GCAGGGAAAA TAATTAATAA TTCTGATATT ACAGTTACAA GCGATGCAAA AAATGCAAAA 
ACACTTGTTG CATATCAGGG CGGAGAAATA ACTAATAATG CCGTTATGAC AAATAATTCT 
ACAAGAGACA GAGCAGTAGG CTCTACTAAC GTAGGTGCTT TGGGAATGGC TCTTTTAGGT 
TCTTCAAGCA TCGGGACAAA TTCAAATACA GGGAAATTAC TGCTTCAGAA TACCGGAACC 
AAATTGTCGG TAGGGGTGTA TAACGAGGGA ACATTTACAA ATAATGGAGA AATAGAAGTA 
TACGGTAGTG AAGGAATAGG GGTATACTCA CAGGGGGCAG CTTCAATAAC AAATTTGACC 
AATAAAATTC TGGTGAATGG TGATAATTCA GTAGGTCTGT TTTCAGATAA TACAAACAGC 
TCTAATTTTA GTGTAGGTTC TCTGACTCTG AATGTAAACG GTACTGATGC ATATGCATTT 
TATGCCAAAA ACGGAGGGGG ATTTAATATT ACCGGGAATA CAGCAGTAAA TGTAGGAGCC 
GGAGGTATCG GATTTCAATA TGTGGGAACT GGGCTGACGA CTTCTATAAG TCCGACACAG 
ATCACTTCCA TGTTTAATGC AGGCGGAGGT CATCTTACAT TTAATCTTGA TCCGAATTCA 
TATGCTATGG TAATAGAAAA TGCCCAGATA AAAACATCAG AAATAGGAAC TTTTACTGCG 
ATAATGCCTT CTCATGTGAC AATGTCCGGA TCAAATAAAG TAAAGCTGTA TAAAGGACAT 
TTGGAAATAG ATGAGAATTC AAATATAGAT TCAGCAGCAG CAACAGATAT AAAATACAGG 
GATTTACCGA TAGCTTCTTC AAGAATAACA CTGAATTTCG GAAAAACAAT ATCAGGAACA 
GAAAGCGGAC TTGCCGGAAT AGGTCAGGAA AATGACAATA TAGCAGGTAT AACAAATGCT 
CAGATGCTTT TGACAAATAA CGGGACAATA ACACTTACCG GAGCTAATTC TACAGGTATG 
TATGCAAGCT ACGGATCACT TGATAATGCA TTGACGGGGA AAATACAGAC AGCGAGCGGC 
GGAGTAGGAT TATACGGTAC GAACGGGACA ATAACAGCAA ATTCCGGGAT AATAGAATTC 
GGTGACGGTG GAATAGGGAT ATACGGTACG AATGTAACTC CGGGAACCAC GCCGACATAT 
GGTACAAAAG ATGTATCAAT AACACATTCA GGAAGTATTG AATCTAAAGG TACAACTAAA 
GGATACGGGA TAGTAGCTGA TAATGACGGA AGCGGGTCAT CATCCCTTAC TATAAATTCC 
GGGTCATTAA TTGATTTAAG TTCGGTGACT AATGCAGCAG TGGGAGATCT TGTAGGTATA 
TATGCAAAAA ATACTGTGGT AAATTCAAGC GGAGATATTA CTATAGGAAA AAATGGAATA 
GTTATGTACG CCGAGGACAG TAATGTTACA ATAAGCGGCG GGACAATAAA TATTACCGGA 
GATAATGTAC TGGGATTTTA TCTGAAGGGA GCAACAACTT TCAGCGGTTC AGGAACAATC 
AATGTTTCGG GACAGGGAGT CACAATATTT AATCTGAATA CAAATCCAGG TATGGCATTT 
ACAAATCTCT TTACTATAAA TACAATTGGC TCGGGAACTT ATACACTGGG AAGTATAGCC 
AACGGATCAT ATTACTATAA TAACGCTACT ACTCTAGGAG GAAACGGAGC TATGGTTTCC 
GGAAAATCTT CCACAGTGCT ATTTGACAGC GGTGCAAATA TCGGAACTAC AGGGGACAGC 
AATATAGGTA TATATGTGGA CGGTGTTTAC ACAGGAGGAG CTGTACCGGG ATTCACAGCA 
GGTATAGAAG CTGAAAACAG AGGGATAATA ACCCTGAATA ATTCATCGGC AGGTCTTTAT 
GGCTTGAACG GGGCAAGTGT CTATAATGCT GGAGGAACAA TAACAGTAGG AAATGATTCT 
ACGGGAATTT ATGCATCAGG AGGTACATCA AATGCGATGA ATACCGGAAA CATAACAGTA 
GGAAGCAATT CTCAGGGAAT ATATCTGAAG GATGGTATAT TAGCAGCTAA TACAGCAGGG 
AATATATTAA GTGCCGGAAC CAATTCAGTG GGAATTTATG CAGATAATAT TTCGGGTGGC 
ATAATAAACG GAGGAGTAAT AGATTTATCT GGTGATAAAT CAGTGGGAAT TTATGCGACA 
GGACCTGCTA AGAACATAGT AAATACAGGA ACAATAAAAG TAGGTAATTC AACTGAATTA 
AATAATCCGA GTATAGGAAT ATATACTACA ACGCCGGGAG ATATAATAAC CAATTCTTCT 
GTTATTGATT CTGGGAAGAA TTCAATAGGA ATATATGCTG AAGGGGCAAC AGTAAATCAA 
AACGGAACAT CTGTAGTAGG AGAAACGGGA ACAGGTATAT ATACAAAAGG CGGAACTGTT 
GTTTTAGGAT TTGCAAGCGA TATGCAGGTG GGAATGAATG AGGCTGTAGG TGTATATGGG 
ACAAACGGAA CATATATAGT AAACAGCAGT ATGAACCCTG TGAATATAGG AAACGGCGGA 
TACGGCTTTA TACTGGAAAC AGGTTCTGTA TTGGATAATC ATGGTATACT GGCTTTGAAC 
GGGAAGGGAA CAGGGGTATA TTCCGATGGT GCAAATATTG TAAATAATCT TGCAGGAGCC 
GATATAAACA TGGCCGGTGA TAACAATATA GGAATATACA TGGTTTCAGG CGGAACTATA 
AATAATGATG CAAATATAAA CGGAACTCCA GGAAAATCAA ATATAGGAAT ATACAATAAA 
AACGGTACAA TTACAAATAG CGGAACTATA AGTGTAGGAG CATCTGTTCT TGCATATAAT 
TCTGACGGAA CAGTAGACTA TGATAACAGC GGATATGCAG TAGGAATTTA TGGTGAAGGA 
TCAAATATAA ATAATACCGG ACAGATAAAT ATCGGTGAAA ATGGTATAGG ACTCTATACC 
AGAGATAATC CGGTAAAAAT AGTAAATAAG GGAAATATAA CCGGTGTAGG AAATGGTGCA 
ACAGGAATTT TCGTAGACAA CGGAATAGTT GAGAATGATG CCGGGGTTAC TATTTCAATG 
ACAGGCGATA ATACAACAGG AATGGTGGCC AATAAGAACG GTACGATAAT TAACAACGGA 
AATATAATAA TGACAGGTAA TGATGTAACG GCAATGTTTG CTAATATTAC ATCCACAGCA 
ATAAATAACG GAGTAATAGA TATGTCGGGT GCTACGGGAA ACAGTGTGGC CTTTCTTCTC 
GGAGCAGGTT CTACATATGT AAATAATGTA GGAAGTACTT TGAATCTGGG ACTTAGCGGA 
ACTTTATCCG GAAGAGCGGG AATAACACAT GATATACCCA GCATAATAAA CGGAGGAATA 
ATCCAGTCTG ACGGAGTTCT TGCACTTGAC GGAATATCAA TTTCACTGAA GGTGGATCCG 
AGTACTGTAG TATACCAGAG TGATCCGACT ACCGGACCGC AGTTCATAGC AAACGGTGCT 
TCGATAGTAG CAGACACTCT GATAACAGAT AAGCCGATAA TAATACTTCC GGGATTTGCT 
GACGGGACTA ATGCAAATGT TTATAAAATA GTAAACGCGG TAAAAGCATC AGGCGGAATT 
TATGAATTTA TAAGCGGATC GCTGTTATGG GAAGCAATTC CGGAAGCTAC AGGAACAGGT 
GCGGATGTAT ACATGAAGAG AAAAAGCTTT ACTGATTTTA CAGACGGGTT ATGGTTTGAA 
GATTTTGGCA ATGCCTTGGA AGAAAAGTTC CTTGGTTCTT CCGGAGATGC AATGAAAATA 
TACAATAAAA CAGCCTATAT AAAAACAGAG GAAGATTTTC GTCAGATAAT GGCAAGTCTT 
GCTGGAAACG TATATGCTAA TATAAACCAG AGAGAAAATG ACATAGCGGA AATATTTGAA 
AATTCATTGA ATCTTATATC TGATTCTGCG AATAATACAA AAGAAAATGT AAAGGTAAAT 
GTAATTGCAG GAAAAGGTAA AAACAAAGAG GAGACAGACG GAGTTGTACC TTATGACTAT 
ACTACTGCGG GTGTTTTAGC TCTTAGAGAG GTAGAAAGAA CATACAGACA TACTTTCGGT 
TATTCACTGG GATATTTGCA TACCGGATTT GAATTTAATG ACGGAAATGA AAGTGAAGAA 
TGGGTGGATA CAATACAGCT CGGAGTTCAC AGCAAGTATA ATGCCGGAGG ATGGAAGCTG 
AGAAATGATC TTACCGGAAG AGCAAGCATA CATAATGTAG ATAGAAATAT CGAGTGGGGT 
ACTGATCTTG GCAGATCTGA AATGAATGGA ACATATGAAA CATACAGTAT TACAAGTGAC 
AATATACTCG GGAAAGAATT CGGGCTTGGA AAAAGAGTAA ATATAACACC TTACGGAGCA 
TTTAAGGCAA TGTATGTTAC AAGACCGACT TTCAAAGAAA GCGGACTGGA AAGACTTGAA 
GTGGACGGAA ACGATGCTTG GAGCGTAAAG CCAAGGGCAG GAGTGGAGCT TAACGCAGCT 
GTACCTTTGG GATCACAGTC ACCGTGGCAA CTGAAAGGAA CTTTGGATTT TGCTTATGAA 
TATGAGCTTG CAGATTTGAA TGAAAGAGAG AAGGCAAGAC TTGTAGCTGT TGAAGATAAT 
TATCATAAAT TATCAAAGCC GGAAGATGAA AAAGGAACAT TCAGAACAAA AGCATATTTG 
GGTGTTGAGG TAGCAGACAG ATACGGGATA TTCCTGACTG GTGAGTATAA GCTGAGTGAG 
CATGACAAAG ATGATTACAG AGCAGGAGTA ATACTGAAAG CAGTTTTTTA G 

 

Protein sequence

MKKNKKLILS FLALNAVLPI SASGAESSAS LKYDRLYNSV IKNLEAGKSN EKNYKLIEKV 
LSQRNKELKD LYLQSDYIVK PEYLEWQIFF SGFYEEHNEG RDNTGENAEY YSKVNGYYET 
DGSYTVTSAN RASTSGKPYQ PLQKPKEIDL GVNVPISGIT RPPLELNISP NSGSNVTGNY 
GPVTIAAPSV SPGIAISNFQ PANPNVSILA PFVITPVTFT GTGFGQGTSN TFTPGGNPPM 
ENYSYIISNT TANLNTGGTF SGDISFGDSL SSLSNWNSST ASGTPAAFYS AAADKRITIS 
GEWNVTHATA GQTMFISYNP YEVGRGGSTG AQFMEFAGTL NLNNTGTGSL IGIEHQVLSG 
GGGGGSAFNA GAFPVVVNSG TINIDNGTRM LGIMIDREFA TTDFVLPSQT YNTGKIELKA 
NSSQSIGIDF GQYGNGALNT DAYVGDIVVD GTENYGVRVY DVHAGNLNYY DNIRVHGEKS 
NPLIYGAGGD GLIHIKGTKN IGIAFVKKIG ASGYVDNVSN LNILVDGNEG IGILRSGDYV 
ATQTANILLT GSQLKSLMYG DNSNQSILVR SDRFTTVIDP TLGANIGSNV GGTVTLGGIV 
KNGNDNILFL ANGTGQTAAQ AGKIINNSDI TVTSDAKNAK TLVAYQGGEI TNNAVMTNNS 
TRDRAVGSTN VGALGMALLG SSSIGTNSNT GKLLLQNTGT KLSVGVYNEG TFTNNGEIEV 
YGSEGIGVYS QGAASITNLT NKILVNGDNS VGLFSDNTNS SNFSVGSLTL NVNGTDAYAF 
YAKNGGGFNI TGNTAVNVGA GGIGFQYVGT GLTTSISPTQ ITSMFNAGGG HLTFNLDPNS 
YAMVIENAQI KTSEIGTFTA IMPSHVTMSG SNKVKLYKGH LEIDENSNID SAAATDIKYR 
DLPIASSRIT LNFGKTISGT ESGLAGIGQE NDNIAGITNA QMLLTNNGTI TLTGANSTGM 
YASYGSLDNA LTGKIQTASG GVGLYGTNGT ITANSGIIEF GDGGIGIYGT NVTPGTTPTY 
GTKDVSITHS GSIESKGTTK GYGIVADNDG SGSSSLTINS GSLIDLSSVT NAAVGDLVGI 
YAKNTVVNSS GDITIGKNGI VMYAEDSNVT ISGGTINITG DNVLGFYLKG ATTFSGSGTI 
NVSGQGVTIF NLNTNPGMAF TNLFTINTIG SGTYTLGSIA NGSYYYNNAT TLGGNGAMVS 
GKSSTVLFDS GANIGTTGDS NIGIYVDGVY TGGAVPGFTA GIEAENRGII TLNNSSAGLY 
GLNGASVYNA GGTITVGNDS TGIYASGGTS NAMNTGNITV GSNSQGIYLK DGILAANTAG 
NILSAGTNSV GIYADNISGG IINGGVIDLS GDKSVGIYAT GPAKNIVNTG TIKVGNSTEL 
NNPSIGIYTT TPGDIITNSS VIDSGKNSIG IYAEGATVNQ NGTSVVGETG TGIYTKGGTV 
VLGFASDMQV GMNEAVGVYG TNGTYIVNSS MNPVNIGNGG YGFILETGSV LDNHGILALN 
GKGTGVYSDG ANIVNNLAGA DINMAGDNNI GIYMVSGGTI NNDANINGTP GKSNIGIYNK 
NGTITNSGTI SVGASVLAYN SDGTVDYDNS GYAVGIYGEG SNINNTGQIN IGENGIGLYT 
RDNPVKIVNK GNITGVGNGA TGIFVDNGIV ENDAGVTISM TGDNTTGMVA NKNGTIINNG 
NIIMTGNDVT AMFANITSTA INNGVIDMSG ATGNSVAFLL GAGSTYVNNV GSTLNLGLSG 
TLSGRAGITH DIPSIINGGI IQSDGVLALD GISISLKVDP STVVYQSDPT TGPQFIANGA 
SIVADTLITD KPIIILPGFA DGTNANVYKI VNAVKASGGI YEFISGSLLW EAIPEATGTG 
ADVYMKRKSF TDFTDGLWFE DFGNALEEKF LGSSGDAMKI YNKTAYIKTE EDFRQIMASL 
AGNVYANINQ RENDIAEIFE NSLNLISDSA NNTKENVKVN VIAGKGKNKE ETDGVVPYDY 
TTAGVLALRE VERTYRHTFG YSLGYLHTGF EFNDGNESEE WVDTIQLGVH SKYNAGGWKL 
RNDLTGRASI HNVDRNIEWG TDLGRSEMNG TYETYSITSD NILGKEFGLG KRVNITPYGA 
FKAMYVTRPT FKESGLERLE VDGNDAWSVK PRAGVELNAA VPLGSQSPWQ LKGTLDFAYE 
YELADLNERE KARLVAVEDN YHKLSKPEDE KGTFRTKAYL GVEVADRYGI FLTGEYKLSE 
HDKDDYRAGV ILKAVF