| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_2826 |
|---|
| Symbol | |
|---|
| ID | 8569497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013502 |
|---|
| Strand | - |
|---|
| Start bp | 28854 |
|---|
| End bp | 31067 |
|---|
| Gene Length | 2214 bp |
|---|
| Protein Length | 737 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | CRISPR-associated protein, Csm1 family |
|---|
| Protein accession | YP_003292081 |
|---|
| Protein GI | 268318363 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGGT CACAGATCGA GTACCTTGGC GGACTGCTGC ATGCGATCGG GTTGCTGGAG
CAGCTCGGCC GCGAGCAATT CGATGCGCCG GGAATTTCCA GCCTGCAGTT TACCGAGCAA
CTGCTGCAGC ACTGCCCGGC CTTTGCACGG CATGCCGGAG CCATTCGCGA AGCGGTGCGC
GAGGCGGCCG ATGCGCTTCC TGCAGAACGC CCTTCATCCT GGCTGGAGCC GCTGCTGCAG
CGGGTGCGGC TTCCGGGCTA TCCAGAGCCG ACGGGCGGAC GTGTTTTTCC GCCCCGTTCG
CTTTCGGACG GGGTCGTCTA CCCCGTTGCG CCCGAAGCGG TGGGAGACGG CCGGGAGGCC
TGCCGCAAAC TCTGGCAGGA TCTGTGGGCA GAAGCTACCC GCACGTTGCA GGGCATCGAT
GATGCCGGGG CGGCGCTGGA GACGCTCTAC ACGCTGCTCG AGAAATACAC GAGCTACATA
CCGGCGCCCG CGGTGCAGGC GCGCGGCGTT TCGCTGTTCG ACTACAGTCG GGTGACGGCA
GCTCTGCGTC TGTGTCGTAC CCGGGCGGAA CGTGAGCCCG CCGTCCTGCT CGTCAAGGGC
GACGTTTCGG GCATCCAGTC GTTCATTTAC CGCGAGCTAC GCGGCGACGA AACCGAAAAC
CCTGCGCAGC TCCTGCGGGG CCGTTCGTTT TTCGTGGCGC TGCTGGCCCG CACCGTGGTG
CGCCACCTGC AGCGGCTGTT CCAGTTGCCC GACGGGTGCG TGCTCTACAG CAGCGGCGGC
CACTTCGTGA TGCTGCTGCC CAACACCGAA GATGCCCGTC AGCGGCTTGA CGAAGCGGAT
CGAAGCATCA ACCAGGCTCT TTTCCAGGAG CTGAACGGGG CCATTCAGCT GGTGCTGGCC
CACGCGGAGG CCGACGCCCG GACGATCGAG CACGATCCAT CCGAAGCGTT GTATCGGCTC
GAAGAGACCC TGCAGGTTGC CAAGCTTCGA AAAGGCTGGA GTGTTCTGGA GACGCTGGTC
GGGCAGCCCA TCGGGGAAAC GCCAGCCCTG CCGAATCTCA ACCGCGTTGG TAAGGCGCTG
CCCTATACCG ATTATCTGAT CGAAGTGCCC GGACTGTCGG TGGCCGAGGT ACCGGAGGGG
GTGCGTACGG AGCTGATGCT TTCGGGCTTT GAAACGGCCT GGCTGTTCGT GGAGGAGGAG
GCGCTGGAGC CGGTGCTGCA GCGACTGGGC GCCCGGAGCG CTACCGTTTT CAACCTGCGC
ACGACGAAAA TCCCGGCCGT GGCTGTCGCG CGGCGTACCG GCTATCGACT GATGCCCGCC
GGCGTGTATG TGCCGATGAC CGAGGCCAGC GAAAGCAGGC GGCCGCTCAT GTTCGAGGAG
CTGGCGGCGA TCGAAAGCGC AAACTACCCG CTGCTGGGTT TTCTGCGCAT GGATGTGGAC
AACCTGGGCG CGCTCTTTGT GGTGGGGCTG CGCGAGGCCT TCGGGGAGCA TCGGTTCGGT
CTGCACCGCA CGGCGGCCCT TTCGCGGGAG CTGGACCGCT TCTTCGGGGC CCATGTCAAC
ACGCTGGCTC GCGGACTCGA CGTCTATCTG GTCTATGCCG GTGGAGACGA CCTGTTTGCC
GTGGGGTCCT GGGTTCGCGT GCTGCGCTTT GCCCGGAGCA TCCGGGAAAA GCTGCGCGAA
TACTGCAGCA ACAACCCGTC GGTGACGATT TCGGCCGGGC TTTCGATTCA CAAAGAGCAT
TTTCCGATTA CCGTGGCGGC CGATGCGGCC GGCGAAGAGG AGGAGCGGGC CAAGCAGGCC
GGAAAGAACA GAATTTCGCT GTTTGAGACG CCGGTCGCGT GGGAGCAGCT GCGTCATCTG
GTAGACGAGC TGGCCGAGCC GCTGCTGCAG GCAATCATCG ACGAGACGCT GCCCGAAGAG
GAGCGCATTC CGCGGACCTT CGTCCACACG CTCCTGCGCT ACAGCCGCGA AGTGCTCGAC
GAAGACGGAC GGGTCGATCT CGGGGCGCTG GCCCGCCTCA ACCATCTGCT GCACTACACG
TTTGCGCGCC GGAACGTCCG CGAGGAGATG CTGCAGCAGG CACCGGACCG CCCGCTGGTC
CGCCTGGCGC AGGGCTTTCT ACTGCTGGAG CGTCCCGACC GCAGCGAGTG GTTCCGGACG
TTCATCATTC CGGCCGCCTA CGTGCTGCTG AAAACCCGCA AACAGCGCGA CTGA
|
|---|
| Protein sequence | MDRSQIEYLG GLLHAIGLLE QLGREQFDAP GISSLQFTEQ LLQHCPAFAR HAGAIREAVR
EAADALPAER PSSWLEPLLQ RVRLPGYPEP TGGRVFPPRS LSDGVVYPVA PEAVGDGREA
CRKLWQDLWA EATRTLQGID DAGAALETLY TLLEKYTSYI PAPAVQARGV SLFDYSRVTA
ALRLCRTRAE REPAVLLVKG DVSGIQSFIY RELRGDETEN PAQLLRGRSF FVALLARTVV
RHLQRLFQLP DGCVLYSSGG HFVMLLPNTE DARQRLDEAD RSINQALFQE LNGAIQLVLA
HAEADARTIE HDPSEALYRL EETLQVAKLR KGWSVLETLV GQPIGETPAL PNLNRVGKAL
PYTDYLIEVP GLSVAEVPEG VRTELMLSGF ETAWLFVEEE ALEPVLQRLG ARSATVFNLR
TTKIPAVAVA RRTGYRLMPA GVYVPMTEAS ESRRPLMFEE LAAIESANYP LLGFLRMDVD
NLGALFVVGL REAFGEHRFG LHRTAALSRE LDRFFGAHVN TLARGLDVYL VYAGGDDLFA
VGSWVRVLRF ARSIREKLRE YCSNNPSVTI SAGLSIHKEH FPITVAADAA GEEEERAKQA
GKNRISLFET PVAWEQLRHL VDELAEPLLQ AIIDETLPEE ERIPRTFVHT LLRYSREVLD
EDGRVDLGAL ARLNHLLHYT FARRNVREEM LQQAPDRPLV RLAQGFLLLE RPDRSEWFRT
FIIPAAYVLL KTRKQRD
|
|---|
| |