| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_2752 |
|---|
| Symbol | |
|---|
| ID | 8569421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013501 |
|---|
| Strand | + |
|---|
| Start bp | 3185127 |
|---|
| End bp | 3187808 |
|---|
| Gene Length | 2682 bp |
|---|
| Protein Length | 893 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | Tetratricopeptide TPR_4 |
|---|
| Protein accession | YP_003292010 |
|---|
| Protein GI | 268318291 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCTTC TGGCCCTGTT CCTCTGGTTC AGTCTGCCGT CCTGGCCGCT TGCCGCGAAT
CCGTGCGATT CGCTACGCCA GGTCGTGGCA CAGCTGCCAC GCGATGCACG CGACGCGCCC
GGTGAGCTTC GGCCACATGC CGTTCAGGCC CTACGGCGCT ACCGCCAGTG CCCGGGGCTG
ACGCGGGAGC AGCTCATGCA ACTCTATCGA CAGGAAGCCA GCTACCTCCA TGCGCTGCAT
CGCTATGCGG ACGTGCTGGC GCTGGTGGAT ACCTTCCTGA CCCGCTTTGC CCGCCAGCCC
GATTCCATGA TGTTCTACCA GATGTACCGC TGGCGAGGCT ATGAATACTA CTTGCTGGGT
GATCTTCCGG CCGCCGTCGT GGCCTACAAT CAGGCGCTTC GTTATCTACC GGCCCGAGAA
ATTCGGGCGC GGGTCAGTCG ATTGACCGAC CTCGGGGCCA TCTACTCCCG CATCCAGGAT
TACGAAACAG CCTATCAGCA TTACCTGCAG GCCTATCATC TGTGGGAGCA AATTCCTTCC
GACGACTCTT TGCGCCTCTG GGCGCGTCTG GACGTACTGC ATGGCCTGGC CAGCCTACTG
GTAGCACATC CTACGACGGG GCATCGCTCT CGCGAAGCAG GACTTGCAGA AGCCGACCGA
CTGATTGCCG AGGCCAGACG TCTGCTTCCC CGCGTGGACA TCTCCCGGCG CCTACGCGCG
CGCATCGAAT TAGAACTGGG GCTTGCGGAA GCCGCACAGC GCTACCTGTC CGGCCGTCCG
GAGCAGGCGC TTCAGATCCT GGACGAGCTA CTTCGACGCT CCCGGCAACT TAACGAGCCG
CACTGGCGCG TGGAGATTCT TTATCGTCGG GGAGTGGCCT TCTGGCATGC AGAACGCCTA
CAGGAAGCCG AGCAGTCCTT TTTAGAAGCA CAGGCACATG CTGATGAAGC ACTGCACGAT
GACACCCGTC GCCTGGTGCT GACCCGACTG GCTCAACTGT ACGAGGATCA GGAGCGCCTG
GACGAGGCCG AACGGTTTTT CCGGAAAGCC ATTCCCTACA CGGAGACGTA TCTGACGCGC
CTGCAGACCA CACGCTGGGC GTCCCTGCCG ACGGCCGACT GGTACGAAGC CTATCGCGGA
CTGGTCCGCA TCCTGTTGCG TCAGGGCCGT CAGGCCGAAG CGCTGCAGTG GCTGGAGCGC
AGCCGCGCGC GTAACCTGCA GGCCTTTCGT ATCTATCACG CCAAGACGCG ACAGATGCCA
CTACACCAGC AGCAGCGCCG CGACAGTCTG GTCCACGCGC TCAACCGGCT CCGCACACGC
CTGAGTGATC CGAACCTGCC CGCCAACGAA GTCCTGAGCC TGAAAAGCCA GGAAGCAGCG
CTTGAACTTC AGCTGCGCAA TCTGCTGGCG CTGCCTTCGA AACCACCGGA AACACCTCTC
GCCACCCTGC GGCAACGCCT GGCCCGACTC GGAGCTTCTG CGCTGGTCTA CTTCATGGAC
TCGGTGAGCG GCCTTTTTCT GCTGACGACC GATACGCTCC GCTTTTTCCC CCTGGCACTC
ACGCCCGACA GCCTGGAGCA TCTTTTGCGC CAGGTCAGTC CGATCTTCGA TCCGGCGGGA
TCCGGTTCGA TACGTGGCGC CCGCCATTTC AACCTGCGCG CGCTGCACCG GCTCTTCGAA
CTGCTCGTCG CTCCGGCGCT CCCGTATCTG TTGCCCGACA GTCCGCTTTT TATTGTCCCC
GACGGGCCCC TCTTCCGTCT ACCGTTTGCC GCCCTGGTGC TCGACTTTCA ACGCCCTTAT
GCTTACGACC GCGCCACCTA TCTGACCGAG CGTCACCCGA TCAGCATCCT GCCGGCGCTG
GGATTGCTGC TGGATAGCCT GCAGGCGCTC CCCTTCTCGC TGGACGTCAG CGGCCTGGGT
CGCGCGCGCT TTACCGACGA CCCGCGCCTG CGTGAGGTAC TGCCCGTGGT CTTTCGCCGC
CAGCCGCTGC CGGATCTCCC CGGCGTGCAC GAAGAACTGG AGCGGATCAC CCGACGCTTT
GCCCACACGC AGCGCTGGGA GGACTACCGG GCCACCGAGC CCCGCCTGCG CCAGGCGGCC
GCCAGCAGCC GCGTGCTTCA CCTGGCCTCG CACGTGCTGC TGCATCCGAC CAGCTCAGCC
TTCCACGCCA TGGTGCTTTC TCCTTCACCC GGCGACGACG GCGTGCTCTT TCTGCATGAA
CTGCTCCGTC ACCCGCTCGC TTCCGATCTG GTGGTGCTCA GCGGCTGCAA CACGGCCGCC
GGCGAGGTCC TGCCCGGCGA AGGGCTCGAA GGACTGCAGT ACGCCATCCT GGCGGCCGGT
GCCCGCGGTG TGGTCGCCAC GCGCTGGCTG GTGGAAGACC GCTCCATGGC CGACCTGATG
GATCGGTTCT ACGGGTACCT GGCGGCCGGG CTGCCGCTGG ACCGGGCGCT CCAGCAGGCC
CGGCTGGCCT TTTTGAAAGA CGCTCCCTCC GAACTTCAGA GCCCCTTCTA CTGGGCGGCG
CCCGCCTTCT TTGGCGCGCC CCGCGTGCTC CCGCTGACGC CGCGGCCGTC ATCGTTTCTG
TCCCGGAGCT GGATCCTGCT GCTCCTGCTC GGGGTTGGCC TGGGCGTATG GCTTCACTAC
CGCAAACGCC GTCGTGCCCA TGGAGCGTCC CGCGCTGTTT GA
|
|---|
| Protein sequence | MWLLALFLWF SLPSWPLAAN PCDSLRQVVA QLPRDARDAP GELRPHAVQA LRRYRQCPGL
TREQLMQLYR QEASYLHALH RYADVLALVD TFLTRFARQP DSMMFYQMYR WRGYEYYLLG
DLPAAVVAYN QALRYLPARE IRARVSRLTD LGAIYSRIQD YETAYQHYLQ AYHLWEQIPS
DDSLRLWARL DVLHGLASLL VAHPTTGHRS REAGLAEADR LIAEARRLLP RVDISRRLRA
RIELELGLAE AAQRYLSGRP EQALQILDEL LRRSRQLNEP HWRVEILYRR GVAFWHAERL
QEAEQSFLEA QAHADEALHD DTRRLVLTRL AQLYEDQERL DEAERFFRKA IPYTETYLTR
LQTTRWASLP TADWYEAYRG LVRILLRQGR QAEALQWLER SRARNLQAFR IYHAKTRQMP
LHQQQRRDSL VHALNRLRTR LSDPNLPANE VLSLKSQEAA LELQLRNLLA LPSKPPETPL
ATLRQRLARL GASALVYFMD SVSGLFLLTT DTLRFFPLAL TPDSLEHLLR QVSPIFDPAG
SGSIRGARHF NLRALHRLFE LLVAPALPYL LPDSPLFIVP DGPLFRLPFA ALVLDFQRPY
AYDRATYLTE RHPISILPAL GLLLDSLQAL PFSLDVSGLG RARFTDDPRL REVLPVVFRR
QPLPDLPGVH EELERITRRF AHTQRWEDYR ATEPRLRQAA ASSRVLHLAS HVLLHPTSSA
FHAMVLSPSP GDDGVLFLHE LLRHPLASDL VVLSGCNTAA GEVLPGEGLE GLQYAILAAG
ARGVVATRWL VEDRSMADLM DRFYGYLAAG LPLDRALQQA RLAFLKDAPS ELQSPFYWAA
PAFFGAPRVL PLTPRPSSFL SRSWILLLLL GVGLGVWLHY RKRRRAHGAS RAV
|
|---|
| |