| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_2625 |
|---|
| Symbol | |
|---|
| ID | 8569293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013501 |
|---|
| Strand | + |
|---|
| Start bp | 3050188 |
|---|
| End bp | 3051399 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | lipopolysaccharide biosynthesis protein |
|---|
| Protein accession | YP_003291885 |
|---|
| Protein GI | 268318166 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00623391 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCC GGCCCACAAC GGACGCTCAG CAGGAGCGCG CCTGGGACGC GCTGCGTCGG
CTCTACCGCG CCCGCCGCCT GATCGCCGGG GTCACGGCGG TTGCGGCCCT CGGCGCCGTG
ATCTTCAGCC TGCTGCTGCC CAACTGGTAC CGGGCCACGG CCCGCGTGCT TCCTCCGGCC
AGCGGCGGAC TCAGTCCCCT GGCCTCCCAG TTGCTGGGCA ATCTGCCCGG CGTCCTGGGC
GGCGTGCTGG GCGGTAGCAA CACGGCCGGC TACGAGCGCT ACCTGAGCAT CCTCTCCAGT
CGCACGATGT ACGAGCGCTT GGTGGATCGC TTCAATCTGG TGTCGGTCTA CGGGCTGGAG
GACGAAGAAC ATCCGCAGGA GGCGGCCATC GAAGAACTGA GCGACAACGT CTCGTTCGAT
GTCGATCCGG ACTTCGAGTA TCTGGAAATT TCCGTACTCG ATCGCGACCC GCAGCGGGCG
GCCGAGATGG CCAATTTCAT GGTGGAAGAA CTCAATCGCA TCAATGCCGA CCTGATGACG
CAGAGCGCCC GGCGCTATCG CCAGTACGTC GAGCGCCGCT ACCACGAAGC GCTGGCCCGG
CTCGACTCGG TCCTCGACGC CCAGGAGGCC TTCCACAAAC GGTATGGCCT GTTCGATCTG
GAGGCGCAGG CGCGGGGTTT TCTGGAATAC GTGGCCACGC TGCGTGCCGA AGCGCTGCAG
ACCGAAATGC AGTACGAGGC GCTCCGCGCG CAGTTCGGCG ACGACAACCC GCAGGTGCGC
GTGCTGGCCG ATATGAAGGC GACGGCCGAA CGGCGCTACC GGGAAGCCCT TGAAGGCCAG
GAGCGTCTGC TGCCCGTCCC GCAGCAGGAG ATCCCCTCGG CCCTGCGCCA GTACTTCGAC
CTGGAGCGCG AGCGCCTGCT GCAAACCCGT ATTCTGGAAG TGCTGGCGCC GCTTTACGAG
CAGGCCCGCT TCGAAGAGGA GCGGCGCGTC GAGGCCGTGC AGGTGGTCGA TCCGGCCGTG
CCCCCCGTCA AAAAAGCCTG GCCCCGCCGT TCGCTCATCG TGCTGGGCAT TACGCTGGCG
GCCTTCGCGC TTTCCGTGCT GTTCGTACTG GCGCACGGCT GGTGGCAGGA ACAACGCGAA
CTGCTGGACC GGCACGTCCT TCAACACCCG AGCGTGGCCG CCTCGCAGGT ACCTTCTGGC
GAGACGAAGT AA
|
|---|
| Protein sequence | MTTRPTTDAQ QERAWDALRR LYRARRLIAG VTAVAALGAV IFSLLLPNWY RATARVLPPA
SGGLSPLASQ LLGNLPGVLG GVLGGSNTAG YERYLSILSS RTMYERLVDR FNLVSVYGLE
DEEHPQEAAI EELSDNVSFD VDPDFEYLEI SVLDRDPQRA AEMANFMVEE LNRINADLMT
QSARRYRQYV ERRYHEALAR LDSVLDAQEA FHKRYGLFDL EAQARGFLEY VATLRAEALQ
TEMQYEALRA QFGDDNPQVR VLADMKATAE RRYREALEGQ ERLLPVPQQE IPSALRQYFD
LERERLLQTR ILEVLAPLYE QARFEEERRV EAVQVVDPAV PPVKKAWPRR SLIVLGITLA
AFALSVLFVL AHGWWQEQRE LLDRHVLQHP SVAASQVPSG ETK
|
|---|
| |