Gene Rmar_2560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmar_2560 
Symbol 
ID8569226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodothermus marinus DSM 4252 
KingdomBacteria 
Replicon accessionNC_013501 
Strand
Start bp2976741 
End bp2979614 
Gene Length2874 bp 
Protein Length957 aa 
Translation table11 
GC content65% 
IMG OID 
ProductTonB-dependent receptor 
Protein accessionYP_003291824 
Protein GI268318105 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.184362 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACGCC TGTTTCTCCT GATTCCCGTG CTGCTGACGG CCTGGAGCGT CCGGGCTCAG 
ACGGGGCGTA TCGCCGGGAC GGTAGTCGAC GCCGAAACGG GCGAGCCGCT CATCGGCGTG
AACGTGCTCG TGGTGGAAAA AGCCACCGGC GCCGCCACCG ACCTCGAAGG CCGCTACGAA
ATCGCCGACC TCGCTCCCGG CACCTATACG CTGCGCTTCT CTTACGTGGG CTACGTGAGC
CAGACCGTGG AAAGCGTCGT GGTGCGGGCG GGCGAGGTCA CGCGCATCGA TCTGAGCCTG
GCCCCGGAGT CGGTGGGTCT CGAGGCGGTC GTGGTCGAAG CGCGTCTGCT GCGCAACACC
GAAGCGGCGC TGCTGGCCGC CCGTCAGCGG GCCGCCGCCG TCAGCGACGC GATCAGCGCC
GAGATGATCG GCCGCACGGG CAGCAGCGAC GCAGCCGACG CCATGGAGAA AGTAACGGGC
GCCTCGGTGC TCGACGGCAA GTACGTGTAC GTGCGCGGTC TGGGCGAGCG CTACATGAAC
GCCCAGCTCA ACGGACTGGA CCTCCCCAGC GCCGACCCCG ACCGCAAGGC CGTGCCGTTC
GATCTGTTTC CCGCCGCCCT GCTCGACAAC ATCGTCACGG TCAAAACCTT CACGCCCGAT
CGCCCCGGCA GCTTCACCGG CGGCAGCGTC AACCTGAACA CCCGGGCCTT TCCCGACGCC
CTGTCGATCA GCTTTTCCAC TTCGATCACC TACCGGCCGC AGGTGGTGGG CTTCGGCAAT
CCCATTCTGG CCGTGCCCGG CGCCGACCCG GGCGTCTGGG GCTTTCGGGC CGGCCGCCTC
GACGTGCCCG CCCTGCTACA AACACACCGC TTCGAAAACA TTCCGTCGCT CAGCCAGGCC
ATCCTGAACC CCGACAACGC CCGATTGCTG GACCAGCTCT CCCGGGCGCT CACGCCTGAA
ATGGCTCCGG TCTACCGACG GGCGCCGCTC AACCAGAGCT ACACGTTTTC GGCAGGCAAT
CGCTTCGACC TGGGCGGCGA TCGACTGCTG GGCCTGGTGG CCAGCTTCAG CTATCGACGA
CAGGCCACCG CCTACGACGA CGGCATCTGG GCCCGCTACC GGCTGACCGG CCGCGACGAA
GCGGTCCTTT CCGAGGATAA CTACCTGCAC ACCATCTCGG GCACCGACGA AGTCGTCTGG
GGCAGCCTGA TCAATGCGAC GCTGCGCCCG CATCGGCGGC ACGAGCTGGG CTTCAGCTTC
ATTCAGAACC ACAGCGCCGA AAGCACCGCC CGCTACCAGC GTGGTCGTTT TCTGTACAAT
CTGGAGCCCG ACGACATCTA CGAAACGCGC GCGCTCATTT ACATCGAACG TGACATCCGC
ACCTACCAGG TTCGGGGCAA GCATGCGCTC GGCGACGGAC GCCAGCCCGC CACGCTGAGC
TGGGACTTTT CCACGACCGG CACCTGGCAG GACGAACCCG ACCGCCGCTT TTTCACGAAC
CATTATCGCC TGCGCACCGG CAGCGACGGC TCCATCGACA CGCTCTACAC GATCCGCGCC
ACCACGCCCC CACAGCGCTA CTTCCGCTAT CTGGAAGAAT CGAACCAGGT GGGCAATCTG
GCCCTGGAAG TACCACTCAC GACCGCCCTG CGCCTCAAGG TGGGCGGCTA CCTGGAGCGC
AAAACACGCA CCTATCGCGA GCGCAAATTT GTGCTGCGCC AGCAGCGGGG CAACCGCTAC
GACGGTGACC CCGAGGCTTA CTTCGCGCCC GAAAACCTGG GCATCATTCA GGAACGCGAC
CTGAACGGTG ACGGCGCACC CGATCTGTTC ACCTTCGGCC TGTATCTGCA GGAAGACACG
CAGCCTTCTT CCAACTACGA CGGTACCCAG GACATCCGGG CCGGCTTTGC CATGATCGAC
TGGACGCCGC TGCGCCGGCT GCGGGTGATC ACCGGGCTGC GCTACGAAAC CACCGACATG
GAAGTGGTCA GCCAGGACCC CACCAAAGAC GTGGGGCGGC TCCGGAACGG CGACTGGCTT
CCGGCGGCTA CGGTCATCTA CCGGCTGGCC GACGACATGA ACCTGCGGCT GGCCTACGGC
CGCACGCTGG CCCGACCGGT CTTCCGTGAG CTGGCCCCCT ACTCGACCTT CGAGTACGTG
GGCGGCTACC TGCTCACCGG CAACCCCGAC TTGCGCCGCA CGCTCGTGGA CAACTTCGAC
CTGCGCTGGG AATGGTTCGT GCGTCCGGGC GAATTGCTCG CCGCCAGCCT GTTTTTCAAG
TACTTCGACG ATCCGATCGA AGTCGTCTAC CAGCCCTTCG CGCCCAACGA CAGCCCCGAG
GTGCAGTACC GCAATGTCGA AGACGCCACA CTTTACGGGC TGGAGCTGGA GCTGCGCAAG
CGGCTGGACT TTCTGAGTGG CGCACTGCGG CATTTTGAAA TCGGCGGCAA CGCGACGTTC
ATCCATTCGA CCGTGCGCGT ACCGGCCGAA GAGCTGCAAT CGATCCGGGA GCTACGACCC
GACGCACCGG CCACGCGCTC ACTGCAGGGG CAGTCGCCCT ACCTCATCAA CGCCGACCTG
AGCTACGTGC ACGAACAGCG CGGCACGACG GTCAGCCTCT ACTACAACGT GTTCGGTCCC
CGGCTGAAGG AAGTCGGACT CGGCGGCACG CCCGATACCT ACGAGCGCCC GCGCCACACG
CTGGACCTGA ACATGAGCCA GCGGCTGATG ACGAATCTGT CGCTCAAGCT GTCGGCGAAA
AACCTGTTGA ACGCCCGCTA CCGCGTTTCC CACAGCTACA GAGGGCGGGA GTACGTGACG
CGCGACTACG GCAGCGGGCG ATCGTTCTCC ATCGGGCTCA GCTACCAGTA TTGA
 
Protein sequence
MQRLFLLIPV LLTAWSVRAQ TGRIAGTVVD AETGEPLIGV NVLVVEKATG AATDLEGRYE 
IADLAPGTYT LRFSYVGYVS QTVESVVVRA GEVTRIDLSL APESVGLEAV VVEARLLRNT
EAALLAARQR AAAVSDAISA EMIGRTGSSD AADAMEKVTG ASVLDGKYVY VRGLGERYMN
AQLNGLDLPS ADPDRKAVPF DLFPAALLDN IVTVKTFTPD RPGSFTGGSV NLNTRAFPDA
LSISFSTSIT YRPQVVGFGN PILAVPGADP GVWGFRAGRL DVPALLQTHR FENIPSLSQA
ILNPDNARLL DQLSRALTPE MAPVYRRAPL NQSYTFSAGN RFDLGGDRLL GLVASFSYRR
QATAYDDGIW ARYRLTGRDE AVLSEDNYLH TISGTDEVVW GSLINATLRP HRRHELGFSF
IQNHSAESTA RYQRGRFLYN LEPDDIYETR ALIYIERDIR TYQVRGKHAL GDGRQPATLS
WDFSTTGTWQ DEPDRRFFTN HYRLRTGSDG SIDTLYTIRA TTPPQRYFRY LEESNQVGNL
ALEVPLTTAL RLKVGGYLER KTRTYRERKF VLRQQRGNRY DGDPEAYFAP ENLGIIQERD
LNGDGAPDLF TFGLYLQEDT QPSSNYDGTQ DIRAGFAMID WTPLRRLRVI TGLRYETTDM
EVVSQDPTKD VGRLRNGDWL PAATVIYRLA DDMNLRLAYG RTLARPVFRE LAPYSTFEYV
GGYLLTGNPD LRRTLVDNFD LRWEWFVRPG ELLAASLFFK YFDDPIEVVY QPFAPNDSPE
VQYRNVEDAT LYGLELELRK RLDFLSGALR HFEIGGNATF IHSTVRVPAE ELQSIRELRP
DAPATRSLQG QSPYLINADL SYVHEQRGTT VSLYYNVFGP RLKEVGLGGT PDTYERPRHT
LDLNMSQRLM TNLSLKLSAK NLLNARYRVS HSYRGREYVT RDYGSGRSFS IGLSYQY