Gene Rmar_2188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmar_2188 
Symbol 
ID8568851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodothermus marinus DSM 4252 
KingdomBacteria 
Replicon accessionNC_013501 
Strand
Start bp2546617 
End bp2548659 
Gene Length2043 bp 
Protein Length680 aa 
Translation table11 
GC content71% 
IMG OID 
ProductTonB-dependent receptor 
Protein accessionYP_003291455 
Protein GI268317736 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGACGCG TTCTGTTCTG GCTCGCGCTG GGCCTGAGTC TGTGGCTCCG GAATGCTCTG 
GCGCAGGAGC GTCCGTTGCC GCGCTTCCGC ACGCAGCAGG ACAGCCTCAC CGTCTTTCAG
TTGCCGCCCG TGCTGGTCGA AGCCACGCGC GGATTTACGG CCCCATGGGG CGAGGCGCTT
CCCCTGCTCA CGCTGGAGCG CCGGCCGCCC GAGGTGCAAT TCCGTCCGGC ACTGACGCTG
ACCGAGACGT TGCGCGAACT GCCCGGTCTC TGGCTCAACG ATCGCCAGAA CTATGCGCTG
GGCGAGCGGC TGCTCGTGCG CAGTGCCGGC TGGCAGGCCG CCTTCGGCGT GCGCGGCGTG
CAGGTCGTGC TCGACGGCAT TCCGCTGACC ATGCCCGACG GCCAGGCCGT GCTCGACCCG
GTCGATCCGG CTTTCATCCG CCGTGCCGAG CTGCTGCGCG GCCCGGCCGC GCTGTTCTGG
GGCAACGGCA GCGCCGGGGC CCTGGTGCTC TCGACCTGGC CCGAGCCGAT TCGCCCCGGT
CTGCGCGTTC GTCTGCTGGG GGGCAGCTAT GGCCTGCGTC GTCTGGGCGG CGAGGCCGTG
CTGCGCGCCG GCCCGCACGC GCTGGCCTTC CACGCCTCGC ACCTGGAGCA GGAAGGCTAC
CGGGCCCATA GCCAGACCCG TCTGAGCCGT TTCGGTCTGC AGGCCGGCGT TCGGCTGGAC
GCCCGCACGC GCCTGCGGGT CACGCTGGCC GGCTCCTGGC TGAATGCCCG GCATCCGGGC
GCCCTGACGG CCGACGAACT GGACCGCGAT CCACGCCAGG CCAGTGCCCG CTACGTGGCC
ACCCGTGCCG GCAAAGACAG CCGGCAGGGG CAGCTCGGCG CGACCTTCGT CCACCGGCTG
CCCGAAGGCT GGCTGACGTT CACCACCTTC GCGCTGGTGC GCCATCTGGA CAATCCTCTG
CCCTTTGCCT ACATCCGCCT GCGGCGCCAG GCCGCCGGAA TACGCACGAC CTGGACGCAG
GAGCGCGGCC GCTGGCGCAC CGGCCTTGGA CTCGACGTCA CGCTGCAGGA CGACGACCGC
CAGAACTTTC CCAACGACAA CGGCCGCCCC GGCACGCCGC GCCTGCTTGA CCAGCGCGAG
CGCGTCGGTG AACTGGCGCT GTTCGGTCTG GCGCGCTATG CCTTCACGCC GCGCCTGCAG
GCGCTCGCCG GCCTGCGCCT GAGCTACCTG CACTTCGCCC TGACCGACTA CCTGCTCACC
AACGGCGACC AGTCCGGCCG CCGCACGTTC AGCGTCTGGA CGCCCACGCT GGGCGTGGTT
TACCGGGTGG CGTCCGGCAC GCAGCTTTTT GCCACGCTGG GCACGGCCTT CGAGTCGCCC
ACCACGACCG AACTGGTCAA CCGTCCGGAC GGCCGGGGCG GTTTCAATCC CGAGCTGGAC
CCGCAGTACC TCTACGGCAT CGAGCTGGGC GGCCGCCGCC GGGAAAGCAC CCTCCAGGCC
GATCTGACGC TGTTCTACCA GTGGGTGCGC GGCCGCATCA TCCCCTTCCA GCTCGAAGGC
GACGGCCGCA CCTTCTACCG CAACGCCGGC CGCACGCGCC AGTACGGAAT CGAACTCTGG
CTGCAGGCAC GGCTGACGCC GGCGCTACAG GCCCGGCTGG CCTACACGGG CGCCCGCTAT
CGGTTCGAGG AAGCCGAGCT CCGGGGCAAG CGCCTGCCCG GCCTGCCCGA ACAGCGCCTT
GCGCTCACGC TGCAATACCG GAGAGGACCG CTCTGGCTGG AGACGACCGG CACGGCCGTG
GGTCCCTGCT ATGCCGACGA TGCCAACACC GTGCGCGTGG ACGGCTACGT CACGGTGGAC
GTTACGCTGG GACTGGCGCG CTCGCTGCTG CCCGGATTTG ACGTGCAACC GTTCGTCTCC
GTGCAGAATG TGCTGGACCG ACGCTACGTG GGCTCCGTCG TGGTCAACGC AGGTGGCGGC
CGCTATTTCG AACCCGCCGC CGGCCGCAGC GTTCGCTTCG GGCTGAATCT GCGCACCCCC
TGA
 
Protein sequence
MRRVLFWLAL GLSLWLRNAL AQERPLPRFR TQQDSLTVFQ LPPVLVEATR GFTAPWGEAL 
PLLTLERRPP EVQFRPALTL TETLRELPGL WLNDRQNYAL GERLLVRSAG WQAAFGVRGV
QVVLDGIPLT MPDGQAVLDP VDPAFIRRAE LLRGPAALFW GNGSAGALVL STWPEPIRPG
LRVRLLGGSY GLRRLGGEAV LRAGPHALAF HASHLEQEGY RAHSQTRLSR FGLQAGVRLD
ARTRLRVTLA GSWLNARHPG ALTADELDRD PRQASARYVA TRAGKDSRQG QLGATFVHRL
PEGWLTFTTF ALVRHLDNPL PFAYIRLRRQ AAGIRTTWTQ ERGRWRTGLG LDVTLQDDDR
QNFPNDNGRP GTPRLLDQRE RVGELALFGL ARYAFTPRLQ ALAGLRLSYL HFALTDYLLT
NGDQSGRRTF SVWTPTLGVV YRVASGTQLF ATLGTAFESP TTTELVNRPD GRGGFNPELD
PQYLYGIELG GRRRESTLQA DLTLFYQWVR GRIIPFQLEG DGRTFYRNAG RTRQYGIELW
LQARLTPALQ ARLAYTGARY RFEEAELRGK RLPGLPEQRL ALTLQYRRGP LWLETTGTAV
GPCYADDANT VRVDGYVTVD VTLGLARSLL PGFDVQPFVS VQNVLDRRYV GSVVVNAGGG
RYFEPAAGRS VRFGLNLRTP