Gene Rmar_2082 details

Gene Information

• Locus tag: Rmar_2082
• ID: 8568741
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodothermus marinus DSM 4252
• Kingdom: Bacteria
• Replicon accession: NC_013501
• Strand: -
• Start bp: 2425335
• End bp: 2428856
• Gene Length: 3522 bp
• Protein Length: 1173 aa
• Translation table: 11
• GC content: 61%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003291351
• Protein GI: 268317632

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.843003
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGAGA TGCTACGAGG TCTGTTTTTG ATCGGCGTGC TGGCCGTTCA GACTACGGTA 
GCGGCCGAGC GTCCGCAGCC GGTGAGGCAT TTCGCGCCGC TGCACTGGTA CGCGTACAGT 
GACAGCGTCG AGAAAATCAA CGAGCGGCTG GTTTCGCTCG AGGCACAGAA TCTGTCGCTG 
CGGCAGGCGC TGGCGCGTCT GGTGGCGCAG GTGGGCGGGC GTCTGACTTA CGATTCGGCA 
CAGGTGCCGG ATCGTCAGGT CCGGGTTTCG CTGCAGGCGG TACCGCTGGA GGTGGCGCTG 
GACAGCCTGC TGGTCGGGAC GAACCTGACG GTGTGGGCTT CGCCCAGCGG ACAACTGGTG 
CTGGTTCCGA CGCCCCGGGC TCCGGAAAAG GCGCCGGCTC CTCAGCACGC CGTGCAGGGA 
CAGGTGCTCG ATGCGGAAAC GGACGACCCG CTTCCCGGCG TCAACGTGGT GGTCAAGGGA 
ACCATGATCG GGACGACGAC CGATCTGGAC GGCTACTATG CGCTGGAAGC GCCTTCACCT 
GAGGACACGC TGGTCTTTTC GTTCGTGGGT TACCGGAGCG CGGAAGTGCC CATCGACGGA 
CGGACGCGTA TCGATGTGCG GCTTCTTCCG GCGGTGGAGG AACTGGAAGA AATTGTCGTG 
ATCGGCTATG GCACCCAGCA ACGTGTGCGT GTGACCGGTT CGGTTACTTC GCTCCAGATG 
GAGGAGGTGG CCGAGCTCCC GACGTTCAGC TTTGAGAATG CGATTCTGGG ACGCCTGCCG 
GGGGTGCAGA TTCAGGAAAC CAGTGGAGAG CCCGGCGCCG CTCCGACCGT TCGCATCCGT 
GGGACGCGAT CCATTACGGC CGGCAACGAT CCGCTTTACG TGATCGATGG TTTTCCGGTC 
TCGAGCAATC CCGCCCTGCA GGGATCGATC GCGCTGCGCG ACGAACTCTA TCAGCCACCC 
CCCATCAATC CACTGGCTGG CCTGAATCCG GACGACATCG CTTCGGTCGA AGTGCTCAAG 
GATGCGTCAG CGGCGGCGAT TTACGGTTCG CGGGGAGCCA ATGGCGTCAT TCTGATCACA 
ACGCGGAAGG GTCAGCGCGA TGGAAGCATT CAGGTGCGCT ACAATGGCTA CGTCGGGCTC 
CAGGAGGTCG CGCGCGAACC CGATCTGATG AATGCACGCG AACTGATCGA ATACACGATC 
GATGCGCGCA ATAACAATTA TCGCGAAAAA TACGGTCAGG ACCCGCCCAA TCCGCGGACC 
AATGAAGGCC GACCCAACGA CGACTTCGTG TTGATTCCGG AAAAGTACGT GAACTGGGAC 
GGCACGGATA CAGACTGGCT GGATCTGATC TTTCGCACGG CCCCGACCGT CAGCCAGCAT 
CTTTCGGTCT CGGGTGGGGT GGATAAGCTG GGCTATTATG TGGCGGGTAG CTATCTGATG 
CAGGAAGGCC TGATCGACGG CACCAACGAC CTGACCCGCT ACAGCCTGCG CGTCAACCTC 
GACGCCGATC CGCACGAGCG CTTGCATCTC AATCTGAATC TCAATACCGC CTTCACGCGC 
ACCAATCGCC TGCCGGCCAA TGCGCCGTAC TTTGCCCGGC CCCCCGGCAT TATCTATTCC 
GCCATGGTGC ATTCGCCCGT CATCAAGCCA TACAACGAGG ATGGCTCCAT CAATCAGCTG 
GACAATCAGT CGTATCTGGG TGGAGGCACG ACATCTGCCA GCAATCCGCT GGCCATCATT 
GCGGCGGTAA CGGACGTGCT GGACAACCAT CGGACTTTCG GGACGCTGAG CGCTGACTAC 
ACGCTGCGTC CGGGACTGGT CTATCGCGTG AATCTCGGGG TTGATCTGAA CAATTATCAA 
CGAACGTTTT ACCGGGCCAA CTCGCTGCTC TACCGCACGG CGCGCACGGG CGAACCCTTT 
GGTCAGGCCA ACGCTTCGCA GAGCCTGAAC TGGCTCATCG AGCACACGCT TTCGTACGAG 
GTGAGCCTGA ACGACGCGCA CTATCTGTCG GCAGTGGCCG GCTACACGGC CCAGAAGGAG 
ACGATCGACC TGTCGCAGGT GGAAGCCCGT AACTTCCCGG ACGACAAGGT GAAAACCATC 
AGCGGCGGGC AGGTCACGGG AGGAAGCGGC GTACAGGAGG CCTGGTCGCT GGTGTCGATG 
CTGGCGCGCC TCAGCTACAG CTATCGCGAC CGCTATCTGC TGACGGCTTC GATTCGCTCG 
GATCGGTCTT CTCGCTTCGG CCGGAATCGC CAGACCGGTG TGTTTCCGTC CGTGTCGGTA 
GGCTGGCGCA TCCAGGAAGA GCCTTTCATG CAGCCGGTGC GCGGATTTTT GAGCGAACTG 
AAGTTGCGGA CCAGCTACGG GGTGACGGGC AACTTCCAGA TTCCCAACTA TGCGTCGATC 
AGCCTGCTGG ACCAGGCCAA CTACGTGGTA GGCAATCAGG TAGTGCTGGG GGCGGCCCCG 
GCCACGCTGG GTGACGAAAA CCTGACCTGG GAAACTACCC GCCAGTTCAA CCTCGGCCTG 
GATGTAGGGC TGCTGGCCGA TCGGATCTAC TTCACGGCGG AGTTCTACAA CAGCATCACC 
GAAGACCTGC TGCTCTACGT CAACGTGCCG ACGGCGCTGG GGTACGAGTC GGCCCTGACG 
AATATCGGCA AGGTTCGGAA TCGGGGCTTC GAATTTTCCC TCACGTCCCG GAATCTGGTG 
GGGGCGTTCA CCTGGGAGAC CGACTTCAAT CTCAGCGTGA ACCGTAACAA AGTGCTGGCG 
CTGGGGCCAG ATGATGCGCC TATCTATACG CTCAACATTG CCGGATTGCG CTACGTCACC 
CAGGTAGGGG CGCCGATCGG TAGCTATTAT GGTTTCGTGG TGGAGGGCAT CTATCAGTCA 
GAAGAGGAAA TTGCGCAGGC CCCGGTCGAT AGGCTGGCAC CCAACCCGGG CCCCGGTGAC 
TTTCGCTTCA AGGACATCGA TGGGGATGGC GACGTGGACA ACGACGATCG CACCGTCATC 
GGAAGCTACT TCCCCGACTA TACCTTTGGC ATCACCAACC GGTTCGGGTA CAAAAACTTC 
GACCTGGCCA TTTTTATCCA GGGCGTGCAG GGCAACGAGA TTCTCAACCT GACCAGCCGC 
CACCTGAAAA ATGGCGAGGC TAATTTCAAC AGCTATGCCA TCTTTAACGA GCGGTGGCGT 
TCGCCAGAAA ATCCCGGCAA TGGCAAAGTG CCGCGTGCCG ATCGGCAGAG CGATTTGCAT 
GGCAACAACA ACCGCCCCTC CACTTTCCAG GTCGAGGACG GCTCGTACGT GCGGCTGCGT 
AGCGTGACGC TGGGCTACAC GCTGCCGGAG CGGTTGCTGG GACGTCACCT TTCACAGGCC 
CGCATTTATC TGAGCGCCAC CAACCTGTTC ACCTGGACCA ACTATCTGGG CTTCAACCCG 
GAGGTGAGCA TGCGGGCCGA GAGTGCGTTG ACGCCCGGTC TGGACTACGG TACCTATCCG 
CTGGCCCGAA CCTACACGCT GGGAGTCAGC CTGACTTTCT AA 

 

Protein sequence

MKEMLRGLFL IGVLAVQTTV AAERPQPVRH FAPLHWYAYS DSVEKINERL VSLEAQNLSL 
RQALARLVAQ VGGRLTYDSA QVPDRQVRVS LQAVPLEVAL DSLLVGTNLT VWASPSGQLV 
LVPTPRAPEK APAPQHAVQG QVLDAETDDP LPGVNVVVKG TMIGTTTDLD GYYALEAPSP 
EDTLVFSFVG YRSAEVPIDG RTRIDVRLLP AVEELEEIVV IGYGTQQRVR VTGSVTSLQM 
EEVAELPTFS FENAILGRLP GVQIQETSGE PGAAPTVRIR GTRSITAGND PLYVIDGFPV 
SSNPALQGSI ALRDELYQPP PINPLAGLNP DDIASVEVLK DASAAAIYGS RGANGVILIT 
TRKGQRDGSI QVRYNGYVGL QEVAREPDLM NARELIEYTI DARNNNYREK YGQDPPNPRT 
NEGRPNDDFV LIPEKYVNWD GTDTDWLDLI FRTAPTVSQH LSVSGGVDKL GYYVAGSYLM 
QEGLIDGTND LTRYSLRVNL DADPHERLHL NLNLNTAFTR TNRLPANAPY FARPPGIIYS 
AMVHSPVIKP YNEDGSINQL DNQSYLGGGT TSASNPLAII AAVTDVLDNH RTFGTLSADY 
TLRPGLVYRV NLGVDLNNYQ RTFYRANSLL YRTARTGEPF GQANASQSLN WLIEHTLSYE 
VSLNDAHYLS AVAGYTAQKE TIDLSQVEAR NFPDDKVKTI SGGQVTGGSG VQEAWSLVSM 
LARLSYSYRD RYLLTASIRS DRSSRFGRNR QTGVFPSVSV GWRIQEEPFM QPVRGFLSEL 
KLRTSYGVTG NFQIPNYASI SLLDQANYVV GNQVVLGAAP ATLGDENLTW ETTRQFNLGL 
DVGLLADRIY FTAEFYNSIT EDLLLYVNVP TALGYESALT NIGKVRNRGF EFSLTSRNLV 
GAFTWETDFN LSVNRNKVLA LGPDDAPIYT LNIAGLRYVT QVGAPIGSYY GFVVEGIYQS 
EEEIAQAPVD RLAPNPGPGD FRFKDIDGDG DVDNDDRTVI GSYFPDYTFG ITNRFGYKNF 
DLAIFIQGVQ GNEILNLTSR HLKNGEANFN SYAIFNERWR SPENPGNGKV PRADRQSDLH 
GNNNRPSTFQ VEDGSYVRLR SVTLGYTLPE RLLGRHLSQA RIYLSATNLF TWTNYLGFNP 
EVSMRAESAL TPGLDYGTYP LARTYTLGVS LTF