Gene Rmar_1885 details

Gene Information

• Locus tag: Rmar_1885
• ID: 8568539
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodothermus marinus DSM 4252
• Kingdom: Bacteria
• Replicon accession: NC_013501
• Strand: -
• Start bp: 2204187
• End bp: 2206370
• Gene Length: 2184 bp
• Protein Length: 727 aa
• Translation table: 11
• GC content: 65%
• Product: glycogen debranching enzyme GlgX
• Protein accession: YP_003291156
• Protein GI: 268317437

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACATA GCGCGCAACC GGTTACGTCG GTACAGGCCG TCTGGCCCGG CCGGCCTTAT 
CCGCTGGGTG CCACCTGGGA CGGGCTGGGC GTCAACTTTG CCCTCTACAG CCAGCACGCC 
GAGGCGGTCG AACTGGTGCT GTTCGACCAC CCGGACGATC CCGCGCCTTC GCGCACGATC 
GAAGTGACCG AACGGACAGG CCCGATCTGG CATGTGTACC TGCCCGGCCT GCGTCCCGGC 
CAGCTCTACG GCTATCGCGT CTACGGACCC TACCGGCCGG AGGAAGGCCA CCGCTTCAAT 
CCGAACAAGG TGCTGCTCGA CCCCTACGCG AAGGCCATCG GCCGGCCCCT TCGCTGGCAC 
GACAGCCTCT TCGGTTACAA AATCGGCGAT CCGGCCGGGG ATCTGTCGTT CTCCGAAGAA 
GACAGCGCTC CGTACGCGCC GCTGGGAGCC GTCGTGGAGG GCTGTTTCGA GTGGGGCGAC 
GACCGCCCGC CGCGCATTCC CTGGGAAGAC ACGATCATCT ACGAAACGCA CGTCAAGGGC 
ATCACGAAGC TGCATCCGGA AGTGCCGGAG CCGCTGCGGG GGACGTATCT GGGGCTGACC 
TGCGAGCCGG TGCTGGAGCA CCTGAAGCAG CTGGGCGTCA CCACGATCCA GCTCCTTCCG 
GTGCACGCAA AAGTGCACGA TCGGCACCTG GTCGAGCGCG GCCTGCGCAA CTACTGGGGC 
TACAATCCGC TCTGCTACTT TGCGCCGGAG CCCGAGTACG CCACGAACGG GCCGATCTCG 
GCCGTGCGCG AGTTCAAGAT GATGGTGCGG GCGCTGCATG CTGCCGGCTT CGAGGTGATC 
GTCGACGTGG TCTACAACCA CACGGGCGAA GGCGGCGTGC TGGGCCCCAC GCTGTCGTTC 
CGGGGCATCG ACAACCGCGC CTACTACAAG GCCGATCCGA ACAACCCGCG CTTTCTGGTC 
GATTACACGG GCACCGGCAA CACGCTGGAC GTGGGCAACC CCTACGTCAT CCAGCTCATC 
ATGGACAGCC TGCGCTACTG GGTCACTGAA ATGCACGTCG ACGGCTTTCG GTTCGACCTG 
GCCGCCGCGC TGGCCCGCGA GCTGTACGAC GTGGACATGC TCTCGACCTT TTTTCAGGTC 
ATTCAGCAGG ACCCGGTGCT CAGCCAGGTC AAGCTCATCG CCGAACCCTG GGACGTCGGG 
CCGGGGGGGT ATCAGGTGGG ACATTTTCCC TGGCAGTGGA CCGAGTGGAA CGGCCGCTAT 
CGTGACGCCG TGCGCCGCTT CTGGCGGGGC GATCGGGGCC TCAACGGTGA GTTTGCCACG 
CGCTTTGCCG GCTCCAGCGA TCTGTACGAA CGTAGCGGTC GTCGTCCGTT CGCTTCGATC 
AACTTCGTCA CGGCGCACGA CGGCTTCACG CTGGAAGACC TGGTCAGCTA CACGAAAAAG 
CACAACGAAG CGAATCTGGA AGGCAACCGG GACGGCATGG ACGAAAACTA CAGCACGAAC 
TGCGGGGTGG AGGGACCCAC GCAGGATCCG TCCGTGCTGG CCTGCCGGGA AGCGCTCAAG 
CGCAGCCTGA TCAGCACGCT CTTTCTCTCG CAGGGCGTGC CCATGCTGCT GGGCGGCGAC 
GAGCTGTCGC GCACGCAGCA CGGCAACAAC AACGCCTATT GCCAGGACAA CGAGATCAGC 
TGGTACAACT GGCAGCTCGA CACGCGCAAG CAGCAGTTTC TGGAGTTCGT GCGCCAGACG 
ATCTGGTTTC GCAAGCAGCA TCGGAGCTTC CGGCGCCGCC ATTTTCTGAC CGGATTGCCC 
AACGGCGGAG AGGCCCCCGA CGCAGTCTGG TGGCACCCTG AGGGTCGGCC CATGCGCCAC 
GAGGACTGGA CCAACCCGGA GCTGACGGCC TTCGGACTGC TGCTGCACGG CGACGCCATT 
CAGGGGACCG ACGAGCACGG ACGACCGTTT CGCGACGACA CGTTTCTGAT TCTGTTCAAC 
AACGGCAGCG AAGCCGTGCC GGTCGTGGTG CCGGAGGTAT GCTCCTGTGG CAAGCCGCAC 
CACTGGGAGG TGGTCCCGGT GTTTCAACGC AATGTGGAGC CCCCCACGTG CGCGCCCGGC 
GAGACGCTGT CGCTCCCGCC CGGCGTGCTG ACGGTGCTGG TGGCCGTACC GCCGTTCTCG 
GATGGAAACA CGGAGCCGGC CTGA 

 

Protein sequence

MSHSAQPVTS VQAVWPGRPY PLGATWDGLG VNFALYSQHA EAVELVLFDH PDDPAPSRTI 
EVTERTGPIW HVYLPGLRPG QLYGYRVYGP YRPEEGHRFN PNKVLLDPYA KAIGRPLRWH 
DSLFGYKIGD PAGDLSFSEE DSAPYAPLGA VVEGCFEWGD DRPPRIPWED TIIYETHVKG 
ITKLHPEVPE PLRGTYLGLT CEPVLEHLKQ LGVTTIQLLP VHAKVHDRHL VERGLRNYWG 
YNPLCYFAPE PEYATNGPIS AVREFKMMVR ALHAAGFEVI VDVVYNHTGE GGVLGPTLSF 
RGIDNRAYYK ADPNNPRFLV DYTGTGNTLD VGNPYVIQLI MDSLRYWVTE MHVDGFRFDL 
AAALARELYD VDMLSTFFQV IQQDPVLSQV KLIAEPWDVG PGGYQVGHFP WQWTEWNGRY 
RDAVRRFWRG DRGLNGEFAT RFAGSSDLYE RSGRRPFASI NFVTAHDGFT LEDLVSYTKK 
HNEANLEGNR DGMDENYSTN CGVEGPTQDP SVLACREALK RSLISTLFLS QGVPMLLGGD 
ELSRTQHGNN NAYCQDNEIS WYNWQLDTRK QQFLEFVRQT IWFRKQHRSF RRRHFLTGLP 
NGGEAPDAVW WHPEGRPMRH EDWTNPELTA FGLLLHGDAI QGTDEHGRPF RDDTFLILFN 
NGSEAVPVVV PEVCSCGKPH HWEVVPVFQR NVEPPTCAPG ETLSLPPGVL TVLVAVPPFS 
DGNTEPA