Gene Rmar_1247 details

Gene Information

• Locus tag: Rmar_1247
• ID: 8567895
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodothermus marinus DSM 4252
• Kingdom: Bacteria
• Replicon accession: NC_013501
• Strand: +
• Start bp: 1457740
• End bp: 1459728
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 65%
• Product: proton-translocating NADH-quinone oxidoreductase, chain L
• Protein accession: YP_003290525
• Protein GI: 268316806

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.123872
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCACA CGACCCTGGT TGGACTGATC CTGCTCCTTC CGCTGGCGGG GGCGGTTTTC 
AATGGACTGG GCGGCCTTGC CTTTCGCGGA CTCCGGCGTC AGAAGGTGCT CATCGGGGCG 
CTGGCGACGC TGGCCGTAGC CGTGCCCTTC GTGCTGGCGC TCTATCTGTT TCTGACCTAT 
GGAGGGGAGC CGCTGCTGGC CCGCTTTTTT ACCTGGATCG CCGCGGGCGA GCTGGAACTG 
GCCTTCCAGT ACCGGATCGA CGAACTCTCG CTCGTGATGA CGCTCATCGT CACGGGCGTG 
GGCGCGCTCA TCCATCTGTA CTCGATCGGC TACATGTACG AGGACCGGGG GTACTGGAAG 
TACTTCAGCT ACCTGAACCT TTTCATCTTC ATGATGCTCA ACCTGGTCCT CGCCGACAAC 
CTGACGCTGC TGTTTCTGGG CTGGGAGGGC GTCGGACTCT GCTCCTACCT GCTGATCGGC 
TTCTGGTACG AGGACTTCAA AAACAGCGAG GCCGCCAACA AGGCCTTCAT CGTCAACCGC 
GTGGGCGACG CGGCCTTCCT GCTGGCGATG TTTCTGCTGT TCCGGGAGGT GGGAAGCCTG 
GACTTCGGCG CGTTGCTGGC CGATCCGGCC GCGTTGCCGT CGGGTGTGGT GGCGGCGGCT 
GTGCTGCTGC TGTTCATCGG CGCCACGGGC AAAAGCGCTC AGATTCCGCT CTTTGTGTGG 
CTCCCGGACG CCATGGCCGG CCCGACGCCC GTCTCGGCGC TGATCCATGC CGCCACGATG 
GTCACGAGCG GTCTGTACCT GTTCGCCCGG ATTTCGCCGC TGGCGCTGGC CGCGCCGGAC 
GTGCTCGTGG TGGTGGCGCT GGTGGGCGCG CTGACGGCTT TCATGGCGGC CACGATCGCC 
GTCACGCAGT ACGACATCAA AAAGGTGCTG GCCTACTCGA CGGTCTCGCA GCTCGGCTAC 
ATGTTCATGG CGGCCGGCGT GGGCGCTTTC TTCGTGTCGA TCTTCCACGT GCTCACGCAC 
GCATTCTTCA AGGCCTGTCT CTTTCTCGGA TCGGGTAGCG TGATCCACGC CATGCATCAC 
GTGGAGCACA CGCTGCACGA ACGGGGCCAT CACGGCCATC TCGATCCGCA GGACATGCGC 
AACATGGGCG GGCTGGGACG CTTCATGCCG GCCACGCGCA CCACGTACCT GATCGCCACG 
CTGGCCATTG CGGGCTTTCC GCTGACGGCC GGCTTCTTCT CCAAGGACGA GATTCTGTTC 
AAGGCCTTCG AATACGGCTA CAACGGTCAC GCCTACGCCT GGATCGCCTG GATCCTGGGC 
GTGGTGACGG CGCTGCTGAC GGCCTTCTAC ATGATGCGCT CCTACGTGCT CACCTTCGAG 
GGCACGCCGC GCTGGCCCAT GGCCGATCAG GTGCACCCGC ACGAGTCGCC CGCAACGATG 
ACGCTGCCGC TCTGGGTGCT GGCCGCGCTG TCGCTGGTGG GTGGCTTTGT GGGGCTGCCG 
GGCGTGATCG CCCACGGCGA ATGGAACCTG ATCCACCACT ACTTGGGCGC TTCGGGCGGC 
GGACCGGTAG CCGAGCCCGA ACTGCACGCG CACGTGCCGC TGGCCATCGA GTGGGCACTG 
ATCGGGCTGG GCGTGGCGAT CGCGCTGATC GGGCTCTACT GGAGCTGGAC GGCTTACCGC 
CGCCACGGCC TGGCCTACGA CGACATGCTC CGCGAGCGGT TCGGCGCCTT CTACCGCGTC 
TGGGCCGCCA AGTACTACTG GGATGAATTC TACGATCGGG CGATCGTGCA GCCGCTGCTG 
CGTTTTGCCC GCAACGGGCT GGCCGCTTTC GATCAGAAAG TCATCGACGG AGCGGTCAAC 
GGCGTGGCGC GGCTGATGGC CGAACTCGGC CAGCGCGTGC GCCGGGTGCA AACCGGCGTC 
GTGCAGGCCT ACGCCATGGC CATCGTGCTC GGCGTGGCGC TCGTACTGGC GCTGATGCTG 
TTTGGCTAA 

 

Protein sequence

MNHTTLVGLI LLLPLAGAVF NGLGGLAFRG LRRQKVLIGA LATLAVAVPF VLALYLFLTY 
GGEPLLARFF TWIAAGELEL AFQYRIDELS LVMTLIVTGV GALIHLYSIG YMYEDRGYWK 
YFSYLNLFIF MMLNLVLADN LTLLFLGWEG VGLCSYLLIG FWYEDFKNSE AANKAFIVNR 
VGDAAFLLAM FLLFREVGSL DFGALLADPA ALPSGVVAAA VLLLFIGATG KSAQIPLFVW 
LPDAMAGPTP VSALIHAATM VTSGLYLFAR ISPLALAAPD VLVVVALVGA LTAFMAATIA 
VTQYDIKKVL AYSTVSQLGY MFMAAGVGAF FVSIFHVLTH AFFKACLFLG SGSVIHAMHH 
VEHTLHERGH HGHLDPQDMR NMGGLGRFMP ATRTTYLIAT LAIAGFPLTA GFFSKDEILF 
KAFEYGYNGH AYAWIAWILG VVTALLTAFY MMRSYVLTFE GTPRWPMADQ VHPHESPATM 
TLPLWVLAAL SLVGGFVGLP GVIAHGEWNL IHHYLGASGG GPVAEPELHA HVPLAIEWAL 
IGLGVAIALI GLYWSWTAYR RHGLAYDDML RERFGAFYRV WAAKYYWDEF YDRAIVQPLL 
RFARNGLAAF DQKVIDGAVN GVARLMAELG QRVRRVQTGV VQAYAMAIVL GVALVLALML 
FG