| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_1166 |
|---|
| Symbol | |
|---|
| ID | 8567812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013501 |
|---|
| Strand | + |
|---|
| Start bp | 1358109 |
|---|
| End bp | 1360334 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | Heparinase II/III family protein |
|---|
| Protein accession | YP_003290444 |
|---|
| Protein GI | 268316725 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.307073 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGAC GCACTCTACT GCTTCTGGGG TTGATGCTGG GCCTGCAGGG CACGGCATTT
CTGGAAGTGC TCGCGCAGCC GCGGCATCCC CGTGTGTTCA TCTCGGCCGA AGAGGCGGCG
GCACTTCGGG AGAATGCCGA GCGCTACACG CTGCTCAGGA CCACGCTGGC GCGCGTGCGG
GCCGAGATGG AAGAGGTCCT GGCGAAGCCC ATCGAAATTC CGCCGCCCGG CGAAGCCGGT
GGTTACGAGC ACGAGCGGCA CAAGCAGAAC TACCGCGAAA TGTTCAAAGC CGGGCTGCTC
TACCAGATCA CCGGCGACGA ACGCTATGCC CGGTTCGTGC GGGATATGCT GATGGGCTAT
GCGGCCATGT ATCCCGAGCT GGGGCCGCAT CCGCGCAGCG AGCGCCAGAT TCCCGGCAAG
CTCTTCCACC AGCTGCTCAA CGAGTGCGTC TGGCTGGTGC ACACCATTGT GGCCTACGAC
GCGATCTACA ACTGGCTGAG CGAGGCCGAT CGGGCCCACA TCGAGGCCAG CGTGTTTCGT
CCGATGGCCT CCTGGATCAT GAACGAAGGG GCCTACGAGT TCAACCGCAT CCACAACCAC
GGCACCTGGG CGGTAGCCGC GGTGGGCATG ACCGGCTACG TGATCGGCGA GCCGGACTGG
GTGGAAAAGG CGCTTTACGG CAGCAATAAA GAGGGAAAAA GCGGGTTTTA TGCGCAGCTC
GATCAGCTCT TCTCACCGGA CGGCTACTAC ATGGAAGGCC CCTATTACGC CCGCTATGCG
CTCTGGCCTT TCTTCTTCTT TGCCGAGGCG ATCGAGCGGT ACGAGCCCGA GCGCGGCATC
TACGCCTATC GCGACAGCAT CCTGAAAAAA GCCCTTTATG CCACGGTGCA GACCGCCTTT
CCGGATGGCG TCCTGCCGCC GCTTAACGAT GCCTCGCTCA CGATGGACAT TCGGGCGCCG
GGCGTCGTGC TGGCCACCGA TGTGGTGTTT GCCCGCTACG AGGGCGATCC GGCCCTGCTG
GGCGTGGCGC ACGAACAGGG CCAGGTGGTG CTCAACGGCG CGGGGCTGGC CGTGGCGAAA
GCCTACGACG AGGCGTCCGA AGTGCCCCGG ATGACGTGGC CCAGTGTCGA GTTCACCGAC
GGGGCCGACG GCCGGCGAGG TGGTATCGGC TTTCTGCGTA CCGGCGTGGG CCGCGACCAG
ACCGTCGTGC TCATGAAGTA CGGCGTGCAC GGACTGGGGC ACGGCCACTT CGACAAGCTG
CACTTCATGC TCTACGACAA CGGCCGCCAG GTCATCCGAG ACTACGGCTT TGCCCGGTTC
ATCAACGTGG AACCCAAGTA CGGCGGCCGC TACCTCCCGG AAAACGAAAG CTACGCCAAG
CAGACCATCG CTCATAACAC GGTGGTGGTG GACGAGACCA GCCAGAACCG GGCCGATCGG
GACGAGGCCG AGGCCATGTC GGGCCAGCGG CACTTTTTCG ACGGCAGGGG CGGCCCCGTA
CAGGCCATGA GTGCGCGTGC CAACGGCTAC TGGCCGGGCG TGAACATGCA GCGGACGCTG
CTGCTCGTCG AAGATGCGCG GCTGGACTAT CCCGTGGTGG TGGACCTCTT CCGGGTGACG
GCCGACACCA TGCACCAGTA CGACTATCCC CTGCACTTTC TGGGGCAACC CATCTGGGAC
AACCTGGGCA TTCGGGGCTA CCCCGATCAG CTCAGGCCGC TGGGGACCGA CTTCGGCTAC
CAGCACATCT GGGAGGAGGC GCGAGCGCGC ACCGATAGCG TCGTGCAGTT TACCTGGCTC
GATGGCTCGC GCTACTACAC CTGGACGGTG GCGGCCGCCC CGGCCACAGA GGTCATCCTG
GGACGCATCG GCGCTGGCGA TCCCCGCTTC AATCTACGCC GGGAACCGAT GATTCTGGTG
CGCCGCCGCG GCCGGGACCA TCTGTTCGCC AGCGTCATCG AGCCGCATGG TTACTTCAAC
GAGGCGCGCG AGATCAGCCT AAGGGCCAGG CCTCAGGTGC AGGCGGTACG GGTGATCGGC
CACAGCGAGG CGGCCAGTGT GGTGGAGGTG GTCGGGAAGG GCGGCTGGAC CTGGACCATC
ATGGTGACGA ACGGGCCGGC CGATCCTGAC GCCCGCCATA CCGTCACGTT CGGCAACCGC
ACCTTCTCGT GGACGGGCAA TTATGCGGTG GAGGGCGTGG TCGTTGCCAG TGATTCCCGC
CGTTAA
|
|---|
| Protein sequence | MMRRTLLLLG LMLGLQGTAF LEVLAQPRHP RVFISAEEAA ALRENAERYT LLRTTLARVR
AEMEEVLAKP IEIPPPGEAG GYEHERHKQN YREMFKAGLL YQITGDERYA RFVRDMLMGY
AAMYPELGPH PRSERQIPGK LFHQLLNECV WLVHTIVAYD AIYNWLSEAD RAHIEASVFR
PMASWIMNEG AYEFNRIHNH GTWAVAAVGM TGYVIGEPDW VEKALYGSNK EGKSGFYAQL
DQLFSPDGYY MEGPYYARYA LWPFFFFAEA IERYEPERGI YAYRDSILKK ALYATVQTAF
PDGVLPPLND ASLTMDIRAP GVVLATDVVF ARYEGDPALL GVAHEQGQVV LNGAGLAVAK
AYDEASEVPR MTWPSVEFTD GADGRRGGIG FLRTGVGRDQ TVVLMKYGVH GLGHGHFDKL
HFMLYDNGRQ VIRDYGFARF INVEPKYGGR YLPENESYAK QTIAHNTVVV DETSQNRADR
DEAEAMSGQR HFFDGRGGPV QAMSARANGY WPGVNMQRTL LLVEDARLDY PVVVDLFRVT
ADTMHQYDYP LHFLGQPIWD NLGIRGYPDQ LRPLGTDFGY QHIWEEARAR TDSVVQFTWL
DGSRYYTWTV AAAPATEVIL GRIGAGDPRF NLRREPMILV RRRGRDHLFA SVIEPHGYFN
EAREISLRAR PQVQAVRVIG HSEAASVVEV VGKGGWTWTI MVTNGPADPD ARHTVTFGNR
TFSWTGNYAV EGVVVASDSR R
|
|---|
| |