Gene Rmar_0486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmar_0486 
Symbol 
ID8567120 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodothermus marinus DSM 4252 
KingdomBacteria 
Replicon accessionNC_013501 
Strand
Start bp538341 
End bp539234 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content65% 
IMG OID 
ProductCRISPR-associated protein Cas1 
Protein accessionYP_003289776 
Protein GI268316057 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0583925 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTTTCA AAGGACGCCT CGGACTCGAA TCGGCGCGGG TGCCGCAGGC CGACCGGCAC 
GGACTGCTGT GGCTGGAGCG GGGCCGCCTG AGCGCCGAAG ACGGAACGCT GGTGTTCACC
ACGGCCGGTA CCGATCGGCT GGCCGCCGGC ACCTACGACA TTCCGCTGCA GCAGGTCTCC
AACATCCTGC TCGGACCGGG CACCGTCGTC AGCCACGATG CGCTGCGCCT GCTGGCCCGT
CAGCAGACCG GGTTGCTGGC GGTCGGCTCC GGTGGGGTAC GGCTTTATGC CGTCAGCATG
CCGTTTGGCC CCGACCGTTC GGAGCGGGCA CGTCGGCATG CCCGTCTCTG GGCCGACGAA
ACGCGCCGGC TGGAGATTGC CCGCGCCATG TACGCCATCC GGCTGGGCGG AGCGTTGCCA
CCGTACATTC AGGATCTGGA CACGTTGCGC GGAATCGAAG GGGCACGCGT CAAAGAAAGC
TATCGGCAGC TTGCGCGGCA GTTCGGCATT GACTGGCGGG GCCGTCGGTA CGATCGCCAG
CATCCTGAAC TCAACGATCT GGTCAACAAC GCGATCAACC ATGCAGCCGT TGCCGTTTAC
GCGGCCGCCC GGATTGCCGT GGCCGTAACC GGCACCATCC CACAGCTCGG CTTCATCCAT
GAGGCCTCCG GCCATGCCTT TGCGCTGGAC ATTGCCGATC TGTTTCGAAC CACGGTCACC
GTACCGGTGG CTTTTCGTGC GGTGCGTCAG TTCATCACGG AGGGCGGGCG CGACATCGAA
TCGGTGACCC GGACGCTGGC CGGGCGCACG CTGCGGGACG AGGAGGTCAT TCCACGCATG
ATTGACTACA TCAAGGAACT GATCGATGGC CATGACGATC GCCGTGACCC GTAA
 
Protein sequence
MVFKGRLGLE SARVPQADRH GLLWLERGRL SAEDGTLVFT TAGTDRLAAG TYDIPLQQVS 
NILLGPGTVV SHDALRLLAR QQTGLLAVGS GGVRLYAVSM PFGPDRSERA RRHARLWADE
TRRLEIARAM YAIRLGGALP PYIQDLDTLR GIEGARVKES YRQLARQFGI DWRGRRYDRQ
HPELNDLVNN AINHAAVAVY AAARIAVAVT GTIPQLGFIH EASGHAFALD IADLFRTTVT
VPVAFRAVRQ FITEGGRDIE SVTRTLAGRT LRDEEVIPRM IDYIKELIDG HDDRRDP